Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ENTCL_RS20540 Genome accession   NC_014618
Coordinates   4426857..4427393 (-) Length   178 a.a.
NCBI ID   WP_013368061.1    Uniprot ID   E3G2C8
Organism   [Enterobacter] lignolyticus SCF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4421857..4432393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENTCL_RS20510 (Entcl_4106) - 4422711..4423406 (-) 696 WP_013368055.1 6-phosphogluconolactonase -
  ENTCL_RS20515 (Entcl_4107) - 4423410..4424123 (-) 714 WP_013368056.1 GntR family transcriptional regulator -
  ENTCL_RS20520 (Entcl_4108) - 4424113..4424550 (-) 438 WP_013368057.1 PTS sugar transporter subunit IIA -
  ENTCL_RS20525 (Entcl_4109) - 4424550..4425362 (-) 813 WP_013368058.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  ENTCL_RS20530 (Entcl_4110) - 4425364..4426146 (-) 783 WP_013368059.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
  ENTCL_RS20535 (Entcl_4111) - 4426152..4426622 (-) 471 WP_013368060.1 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB -
  ENTCL_RS20540 (Entcl_4112) ssb 4426857..4427393 (-) 537 WP_013368061.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ENTCL_RS20545 (Entcl_4113) uvrA 4427642..4430464 (+) 2823 WP_013368062.1 excinuclease ABC subunit UvrA -
  ENTCL_RS20550 (Entcl_4114) - 4430468..4430821 (-) 354 WP_044612197.1 MmcQ/YjbR family DNA-binding protein -
  ENTCL_RS20555 (Entcl_4115) aphA 4430960..4431676 (-) 717 WP_013368064.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19057.07 Da        Isoelectric Point: 5.2456

>NTDB_id=38654 ENTCL_RS20540 WP_013368061.1 4426857..4427393(-) (ssb) [[Enterobacter] lignolyticus SCF1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGASAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=38654 ENTCL_RS20540 WP_013368061.1 4426857..4427393(-) (ssb) [[Enterobacter] lignolyticus SCF1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCTGAAGTTGCCGGCGAATACCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAGTACACCACTGAGGTGGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCGTCGGCAGGCGGCAATATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCC
GCTCCGGCACCGTCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3G2C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

45.506

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.365

Multiple sequence alignment