Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FJD32_RS20905 Genome accession   NZ_CP043902
Coordinates   4675730..4677256 (+) Length   508 a.a.
NCBI ID   WP_099457106.1    Uniprot ID   -
Organism   Shewanella sp. LC6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4670730..4682256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJD32_RS20875 (FJD32_021180) - 4670882..4671586 (+) 705 WP_011718556.1 hypothetical protein -
  FJD32_RS20880 (FJD32_021185) - 4671671..4672750 (+) 1080 WP_099457103.1 sensor histidine kinase -
  FJD32_RS20885 (FJD32_021190) - 4672750..4673262 (+) 513 Protein_4058 response regulator -
  FJD32_RS20890 (FJD32_021195) - 4673363..4674262 (+) 900 WP_088585327.1 IS982 family transposase -
  FJD32_RS20895 (FJD32_021200) - 4674277..4674363 (+) 87 Protein_4060 DNA-binding response regulator -
  FJD32_RS20900 (FJD32_021205) - 4674369..4675514 (-) 1146 WP_099457105.1 DUF1963 domain-containing protein -
  FJD32_RS20905 (FJD32_021210) comM 4675730..4677256 (+) 1527 WP_099457106.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FJD32_RS20910 (FJD32_021215) - 4677357..4678259 (+) 903 WP_037413712.1 acyltransferase -
  FJD32_RS20915 (FJD32_021220) - 4678267..4679208 (+) 942 WP_037431237.1 acyltransferase -
  FJD32_RS20920 (FJD32_021225) - 4679277..4679741 (-) 465 WP_099457107.1 DUF523 domain-containing protein -
  FJD32_RS20925 (FJD32_021230) - 4680074..4680862 (+) 789 WP_099457108.1 GntR family transcriptional regulator -
  FJD32_RS20930 (FJD32_021235) prpB 4680927..4681805 (+) 879 WP_037431229.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55252.72 Da        Isoelectric Point: 7.9847

>NTDB_id=386420 FJD32_RS20905 WP_099457106.1 4675730..4677256(+) (comM) [Shewanella sp. LC6]
MAIACVHTRASCGVEAPEVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPATSLKDTEFVGELALSGQIRHCQGLLPAIIAAKRHNNQLILPLDNRHDAELVGYPKVYFGSHL
QSLAAFLHGQAPLPMLEQQLEWISDEPAQSTPCLSEVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDGPNRATPDQIQRYLARLSGPFIDRFDLTIEVPKLPAGTLTQQS
TQGETSHQIAKRVKCARDIQLARAGVLNSELSGKQLKQFSGINDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDKLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=386420 FJD32_RS20905 WP_099457106.1 4675730..4677256(+) (comM) [Shewanella sp. LC6]
ATGGCGATAGCCTGTGTACATACCCGAGCCAGTTGTGGTGTTGAAGCTCCAGAAGTCACGGTTGAAGTCCATCTCAGTAA
TGGCCTACCCGCCTTTAATCTGGTGGGTTTGCCAGAAGCCTCAGTCAAAGAAGCCCGTGAGCGGGTGCGCAGTGCCCTGA
TCAATGCGGGATTCGAGTTTCCGATGCGCCGGATAACCGTCAATCTCGCCCCCGCAGATTTACCCAAACAGGGCGGCCGT
TACGATTTGCCTATCGCCATCGGCATTCTAGCCGCGTCAGAGCAAATCCCCGCCACGAGCCTTAAGGATACTGAATTTGT
CGGCGAACTTGCCCTCTCAGGGCAAATCCGCCACTGCCAAGGATTACTACCAGCAATCATTGCGGCTAAACGCCATAATA
ATCAGTTAATTCTGCCACTCGATAATCGCCACGATGCCGAGTTAGTTGGCTATCCTAAGGTCTACTTTGGCTCCCATTTG
CAAAGTTTAGCGGCGTTTCTCCATGGACAAGCGCCACTTCCCATGCTGGAGCAGCAGCTCGAGTGGATCTCGGATGAGCC
GGCGCAGTCCACGCCTTGCCTTAGCGAGGTGATAGGTCAATACCAAGCTAAACAAGCACTTGAAATCGCCGCTGCAGGCA
ACCATAACCTATTAATGCTAGGCCCGCCGGGTACTGGCAAAACCATGCTAGCCAGCCGCATGATGGCGCTATTACCTGCA
CTCAATTATGAAGAAGCCTTAGAAGTGGCTGCAATTCATTCCGTCGCGGGCATCAATATCAAACCGCAGGACTTTCTTAA
GCGACCATTTCGCGCGCCGCACCATACTTGCTCCTCAATTTCCTTAGTCGGAGGTGGCAGTATTCCTAAGCCTGGCGAAA
TTTCATTGGCCCATCGCGGAGTATTATTTCTGGATGAAGTCGCTGAATTTCCAAGAAAAGTGCTCGACTGTTTGCGTGAA
CCGATGGAAACAGGTGAAGTGGTGATCTCCCGCGCGGCGGCAAAACTGACCTTTTTAAGCCGCTTTCAATTGATCGCCGC
CATGAACCCCAGCCCGAGCGGCGATATCGACGGCCCCAATCGAGCTACACCCGATCAAATCCAGCGCTATCTCGCCAGAC
TCTCTGGCCCGTTTATAGATAGATTTGATCTCACCATCGAAGTCCCCAAACTCCCCGCAGGCACCCTAACGCAACAGTCG
ACGCAAGGCGAAACCAGCCATCAAATCGCCAAACGAGTAAAATGCGCCCGCGATATTCAACTCGCCAGAGCGGGCGTGCT
TAACAGCGAACTATCAGGTAAACAACTTAAGCAATTTAGTGGTATCAATGATGCTGACCTAGTTTTTTTAGAACAGAGTG
TCGTCAAGTTAGGATTATCCGTGCGCAGCTTTCATCGTATTCAACGGGTTGCCCGCACCATTGCCGACCTTGAGCAGGCC
CCCAATACCGAAAGACGCCACCTCGCCCAAGCCTTAGGATATCGGGCTATGGATAAATTATTGGCCCGTTTATCCCAACA
GTATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.805

99.803

0.567
  comM Vibrio cholerae strain A1552

56.102

100

0.561
  comM Glaesserella parasuis strain SC1401

55.731

99.606

0.555
  comM Vibrio campbellii strain DS40M4

54.921

100

0.549
  comM Legionella pneumophila str. Paris

46.85

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.85

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.738

99.016

0.433

Multiple sequence alignment