Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   F0T10_RS02320 Genome accession   NZ_CP043871
Coordinates   448299..448910 (+) Length   203 a.a.
NCBI ID   WP_050169631.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 443299..453910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS02295 (F0T10_02590) - 443744..444076 (+) 333 WP_003687908.1 hypothetical protein -
  F0T10_RS02300 (F0T10_02595) - 444407..444916 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  F0T10_RS02305 (F0T10_02605) - 445146..445727 (-) 582 WP_003687910.1 superoxide dismutase -
  F0T10_RS02310 (F0T10_02615) dnaB 445891..447297 (+) 1407 WP_050157387.1 replicative DNA helicase -
  F0T10_RS02315 (F0T10_02620) pilH 447605..448267 (+) 663 WP_050157402.1 GspH/FimT family pseudopilin Machinery gene
  F0T10_RS02320 (F0T10_02625) pilV 448299..448910 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  F0T10_RS02325 (F0T10_02630) pilJ 448907..449890 (+) 984 WP_164823233.1 PilW family protein Machinery gene
  F0T10_RS02330 (F0T10_02635) pilK 449869..450477 (+) 609 WP_050303746.1 pilus assembly PilX family protein Machinery gene
  F0T10_RS02335 (F0T10_02640) pilL 450479..450952 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  F0T10_RS02340 (F0T10_02650) - 451564..452009 (-) 446 Protein_459 AzlC family ABC transporter permease -
  F0T10_RS02345 (F0T10_02655) dut 452175..452627 (+) 453 WP_050303745.1 dUTP diphosphatase -
  F0T10_RS02350 (F0T10_02660) dapC 452705..453892 (+) 1188 WP_164823235.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22076.13 Da        Isoelectric Point: 4.8546

>NTDB_id=386334 F0T10_RS02320 WP_050169631.1 448299..448910(+) (pilV) [Neisseria gonorrhoeae strain NG196]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=386334 F0T10_RS02320 WP_050169631.1 448299..448910(+) (pilV) [Neisseria gonorrhoeae strain NG196]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilI Neisseria gonorrhoeae MS11

83.744

100

0.837
  pilV Neisseria gonorrhoeae MS11

83.744

100

0.837

Multiple sequence alignment