Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   F0T10_RS02315 Genome accession   NZ_CP043871
Coordinates   447605..448267 (+) Length   220 a.a.
NCBI ID   WP_050157402.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442605..453267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS02290 (F0T10_02585) cysT 442727..443563 (-) 837 WP_003687907.1 sulfate ABC transporter permease subunit CysT -
  F0T10_RS02295 (F0T10_02590) - 443744..444076 (+) 333 WP_003687908.1 hypothetical protein -
  F0T10_RS02300 (F0T10_02595) - 444407..444916 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  F0T10_RS02305 (F0T10_02605) - 445146..445727 (-) 582 WP_003687910.1 superoxide dismutase -
  F0T10_RS02310 (F0T10_02615) dnaB 445891..447297 (+) 1407 WP_050157387.1 replicative DNA helicase -
  F0T10_RS02315 (F0T10_02620) pilH 447605..448267 (+) 663 WP_050157402.1 GspH/FimT family pseudopilin Machinery gene
  F0T10_RS02320 (F0T10_02625) pilV 448299..448910 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  F0T10_RS02325 (F0T10_02630) pilJ 448907..449890 (+) 984 WP_164823233.1 PilW family protein Machinery gene
  F0T10_RS02330 (F0T10_02635) pilK 449869..450477 (+) 609 WP_050303746.1 pilus assembly PilX family protein Machinery gene
  F0T10_RS02335 (F0T10_02640) pilL 450479..450952 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  F0T10_RS02340 (F0T10_02650) - 451564..452009 (-) 446 Protein_459 AzlC family ABC transporter permease -
  F0T10_RS02345 (F0T10_02655) dut 452175..452627 (+) 453 WP_050303745.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24442.88 Da        Isoelectric Point: 9.4157

>NTDB_id=386333 F0T10_RS02315 WP_050157402.1 447605..448267(+) (pilH) [Neisseria gonorrhoeae strain NG196]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDNDTVDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=386333 F0T10_RS02315 WP_050157402.1 447605..448267(+) (pilH) [Neisseria gonorrhoeae strain NG196]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACAATGA
TACGGTAGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

98.636

100

0.986

Multiple sequence alignment