Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   F0T10_RS02330 Genome accession   NZ_CP043871
Coordinates   449869..450477 (+) Length   202 a.a.
NCBI ID   WP_050303746.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444869..455477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS02305 (F0T10_02605) - 445146..445727 (-) 582 WP_003687910.1 superoxide dismutase -
  F0T10_RS02310 (F0T10_02615) dnaB 445891..447297 (+) 1407 WP_050157387.1 replicative DNA helicase -
  F0T10_RS02315 (F0T10_02620) pilH 447605..448267 (+) 663 WP_050157402.1 GspH/FimT family pseudopilin Machinery gene
  F0T10_RS02320 (F0T10_02625) pilV 448299..448910 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  F0T10_RS02325 (F0T10_02630) pilJ 448907..449890 (+) 984 WP_164823233.1 PilW family protein Machinery gene
  F0T10_RS02330 (F0T10_02635) pilK 449869..450477 (+) 609 WP_050303746.1 pilus assembly PilX family protein Machinery gene
  F0T10_RS02335 (F0T10_02640) pilL 450479..450952 (+) 474 WP_174813111.1 PilX family type IV pilin Machinery gene
  F0T10_RS02340 (F0T10_02650) - 451564..452009 (-) 446 Protein_459 AzlC family ABC transporter permease -
  F0T10_RS02345 (F0T10_02655) dut 452175..452627 (+) 453 WP_050303745.1 dUTP diphosphatase -
  F0T10_RS02350 (F0T10_02660) dapC 452705..453892 (+) 1188 WP_164823235.1 succinyldiaminopimelate transaminase -
  F0T10_RS02355 (F0T10_02665) yaaA 454203..454982 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21978.95 Da        Isoelectric Point: 7.5809

>NTDB_id=386336 F0T10_RS02330 WP_050303746.1 449869..450477(+) (pilK) [Neisseria gonorrhoeae strain NG196]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=386336 F0T10_RS02330 WP_050303746.1 449869..450477(+) (pilK) [Neisseria gonorrhoeae strain NG196]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

90.64

100

0.911

Multiple sequence alignment