Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F0U83_RS01170 Genome accession   NZ_CP043869
Coordinates   244465..245991 (+) Length   508 a.a.
NCBI ID   WP_138986127.1    Uniprot ID   A0A5P1R785
Organism   Neptunomonas concharum strain JCM17730     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239465..250991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U83_RS01145 (F0U83_01145) glnK 240099..240437 (-) 339 WP_138986122.1 P-II family nitrogen regulator -
  F0U83_RS01150 (F0U83_01150) - 240596..241870 (-) 1275 WP_138986123.1 ammonium transporter -
  F0U83_RS01155 (F0U83_01155) glnK 241910..242248 (-) 339 WP_138986124.1 P-II family nitrogen regulator -
  F0U83_RS01160 (F0U83_01160) - 242570..242821 (+) 252 WP_138986125.1 accessory factor UbiK family protein -
  F0U83_RS01165 (F0U83_01165) - 242865..244430 (+) 1566 WP_138986126.1 EAL domain-containing protein -
  F0U83_RS01170 (F0U83_01170) comM 244465..245991 (+) 1527 WP_138986127.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F0U83_RS01175 (F0U83_01175) - 245951..247660 (-) 1710 WP_138986128.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  F0U83_RS01180 (F0U83_01180) rep 247865..249877 (+) 2013 WP_138986129.1 DNA helicase Rep -
  F0U83_RS01185 (F0U83_01185) - 250008..250877 (+) 870 WP_138986130.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54315.58 Da        Isoelectric Point: 8.1878

>NTDB_id=386298 F0U83_RS01170 WP_138986127.1 244465..245991(+) (comM) [Neptunomonas concharum strain JCM17730]
MSLAIVHTRAQLGVSSPAVTVEVHLSAGLPALALVGLPEAAVRESKERVRSAIINSGFEFPQRRITINLAPADLPKEGGR
YDLAIAVGILVASGQLPADILEKTELLGELALSGELRQVTGVLPAAVACKKQGRAFWIPKDNREEAALVRGLDVRAASHF
LDICAALSGKMQLEQVVPTQPISSSAPNQWDLSDVKGQLKAKRALEIAAAGGHNLVLSGVPGSGKSMLAARLPGLLPKLT
EEERLDTAAVYSVAGLPVEAICQGVRPFRSPHHTASAAALVGGGSHPKPGEISLAHQGVLFLDELPEFSRKVLEVLREPL
ETGEILISRAARQTHYPARFQLIGALNPCPCGYAGDPSGRCRCTPDQIRRYQDKLSGPLLDRIDLFVNVQALPPQTLLKL
DQLPSETSVVVAERVSLALDRQHRRQGCRNSLLTAKMLETYCVLSSDDRNILAAAAERFGLSARACHRVMKVARTLADLR
GSEQVERADLTEALGFREGLAGPSSAFS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=386298 F0U83_RS01170 WP_138986127.1 244465..245991(+) (comM) [Neptunomonas concharum strain JCM17730]
ATGTCTCTCGCTATTGTTCATACCCGCGCTCAGTTGGGCGTATCGTCACCTGCTGTCACGGTCGAGGTTCACTTGTCGGC
AGGTTTGCCTGCGTTAGCACTAGTTGGGCTGCCAGAAGCGGCGGTGCGTGAAAGTAAAGAACGTGTTCGTAGTGCCATTA
TTAACTCAGGTTTTGAGTTCCCCCAACGACGAATTACCATTAATTTAGCTCCTGCCGACTTGCCCAAAGAGGGTGGGCGA
TACGATCTAGCTATCGCTGTTGGCATTTTGGTGGCATCTGGACAGCTTCCCGCTGATATATTAGAGAAGACAGAACTCTT
GGGTGAATTAGCCTTGTCGGGGGAGTTACGCCAAGTTACAGGTGTCTTGCCTGCAGCGGTGGCTTGTAAAAAACAAGGGC
GTGCTTTCTGGATTCCAAAGGATAACCGTGAGGAAGCGGCATTAGTTCGAGGGCTGGATGTCAGAGCGGCAAGCCATTTT
CTCGATATATGCGCGGCCCTGAGCGGGAAAATGCAACTGGAGCAAGTTGTTCCGACTCAGCCTATATCCAGCTCAGCTCC
TAACCAATGGGATCTATCGGATGTTAAAGGTCAATTAAAAGCAAAACGCGCTTTAGAAATTGCAGCAGCAGGCGGTCATA
ATTTGGTATTGAGTGGCGTACCAGGTAGCGGTAAAAGTATGCTGGCGGCACGGTTGCCGGGATTGTTGCCTAAGCTGACG
GAAGAGGAACGTCTTGATACGGCAGCAGTATACTCGGTAGCTGGTTTGCCGGTTGAGGCGATATGTCAGGGTGTTCGGCC
TTTCAGGTCGCCCCATCACACAGCGTCGGCAGCAGCCCTAGTAGGAGGCGGTAGTCACCCGAAACCAGGTGAGATCTCTT
TAGCTCATCAAGGCGTGCTCTTTTTAGATGAGTTACCAGAGTTTTCCAGAAAGGTTTTAGAGGTTTTGCGCGAACCTTTA
GAAACGGGCGAAATATTGATCTCCCGAGCGGCACGGCAAACCCACTATCCCGCAAGGTTTCAATTAATAGGCGCGCTTAA
TCCGTGCCCTTGTGGGTATGCTGGCGATCCGAGTGGCCGGTGCCGTTGTACACCAGATCAAATCAGGCGCTATCAAGATA
AGCTCTCAGGTCCTTTACTGGATCGCATCGATCTCTTCGTTAATGTGCAGGCCTTACCGCCGCAGACGTTGCTTAAACTA
GATCAGTTACCTTCTGAAACAAGCGTAGTAGTAGCAGAGCGGGTATCGCTGGCACTGGACAGGCAACACCGCCGGCAAGG
GTGCCGTAACAGTCTGCTCACAGCTAAAATGCTGGAGACCTACTGTGTTTTAAGTAGCGATGACAGAAATATATTAGCGG
CTGCGGCTGAGCGCTTTGGTTTATCAGCCCGTGCTTGTCATCGGGTAATGAAAGTCGCCAGAACCTTGGCTGACCTTCGG
GGAAGTGAGCAGGTTGAACGAGCAGACTTAACGGAGGCGTTAGGCTTTAGGGAGGGTCTTGCTGGCCCGTCGTCAGCATT
TTCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1R785

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.924

97.835

0.528
  comM Vibrio cholerae strain A1552

53.32

97.835

0.522
  comM Haemophilus influenzae Rd KW20

51.497

98.622

0.508
  comM Glaesserella parasuis strain SC1401

50.693

99.409

0.504
  comM Legionella pneumophila str. Paris

49.901

99.016

0.494
  comM Legionella pneumophila strain ERS1305867

49.901

99.016

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

99.803

0.439

Multiple sequence alignment