Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F1719_RS17485 Genome accession   NZ_CP043852
Coordinates   3540952..3541437 (+) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   A0AAU7IP99
Organism   Escherichia coli ATCC 8739     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3532239..3554263 3540952..3541437 within 0


Gene organization within MGE regions


Location: 3532239..3554263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1719_RS17460 (F1719_17875) - 3532239..3533423 (+) 1185 WP_001218910.1 integrase arm-type DNA-binding domain-containing protein -
  F1719_RS17465 (F1719_17880) - 3533834..3534877 (+) 1044 WP_000999851.1 hypothetical protein -
  F1719_RS17470 (F1719_17890) - 3535275..3536345 (-) 1071 WP_000412404.1 LacI family DNA-binding transcriptional regulator -
  F1719_RS17475 (F1719_17895) - 3536607..3537908 (+) 1302 WP_001329026.1 MFS transporter -
  F1719_RS17480 (F1719_17900) - 3537923..3540304 (+) 2382 WP_001313395.1 glycoside hydrolase family 31 protein -
  F1719_RS24015 ykgR 3540485..3540586 (+) 102 WP_001313396.1 small membrane protein YkgR -
  F1719_RS17485 (F1719_17905) ssb 3540952..3541437 (+) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  F1719_RS17490 (F1719_17910) trbC 3541491..3543812 (+) 2322 WP_001164055.1 F-type conjugative transfer protein TrbC -
  F1719_RS17495 - 3543848..3544015 (-) 168 WP_001300931.1 hypothetical protein -
  F1719_RS17505 (F1719_17920) - 3545416..3545871 (-) 456 Protein_3352 hypothetical protein -
  F1719_RS17510 - 3545920..3546075 (-) 156 WP_000074142.1 hypothetical protein -
  F1719_RS17515 (F1719_17930) - 3546695..3547075 (+) 381 Protein_3354 integrase core domain-containing protein -
  F1719_RS17520 (F1719_17940) - 3547354..3550851 (+) 3498 WP_001038839.1 autotransporter outer membrane beta-barrel domain-containing protein -
  F1719_RS17525 (F1719_17945) - 3551026..3551231 (-) 206 Protein_3356 hypothetical protein -
  F1719_RS23785 - 3551230..3551343 (+) 114 Protein_3357 alkaline phosphatase -
  F1719_RS23790 (F1719_17955) - 3551711..3551905 (-) 195 Protein_3358 hypothetical protein -
  F1719_RS17535 (F1719_17960) - 3551884..3552129 (+) 246 Protein_3359 transposase -
  F1719_RS17540 (F1719_17965) - 3552197..3553348 (+) 1152 WP_032304071.1 IS30-like element IS30 family transposase -
  F1719_RS17545 (F1719_17970) - 3553358..3554263 (+) 906 Protein_3361 IS3-like element IS911 family transposase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=386281 F1719_RS17485 WP_000157061.1 3540952..3541437(+) (ssb) [Escherichia coli ATCC 8739]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=386281 F1719_RS17485 WP_000157061.1 3540952..3541437(+) (ssb) [Escherichia coli ATCC 8739]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36

Multiple sequence alignment