Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NMBB_RS02805 Genome accession   NC_017505
Coordinates   542088..542369 (+) Length   93 a.a.
NCBI ID   WP_002245932.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 537088..547369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS12120 - 537538..537806 (-) 269 Protein_503 IS30 family transposase -
  NMBB_RS14780 - 537805..537978 (+) 174 WP_153309627.1 hypothetical protein -
  NMBB_RS02775 (NMBB_0555) - 537981..538916 (+) 936 WP_014575201.1 immunity 49 family protein -
  NMBB_RS12125 - 538913..539146 (+) 234 WP_228777335.1 hypothetical protein -
  NMBB_RS02780 (NMBB_0556) - 539149..540087 (+) 939 WP_014575202.1 immunity 49 family protein -
  NMBB_RS14785 - 540650..540853 (+) 204 WP_002261355.1 hypothetical protein -
  NMBB_RS02800 (NMBB_0557) - 541418..541876 (+) 459 WP_002214429.1 hypothetical protein -
  NMBB_RS13885 - 541875..542009 (+) 135 Protein_510 IS1595 family transposase -
  NMBB_RS02805 (NMBB_0559) comA 542088..542369 (+) 282 WP_002245932.1 ATP-binding cassette domain-containing protein Regulator
  NMBB_RS02810 (NMBB_0560) - 542396..543616 (-) 1221 WP_021438255.1 YihY family inner membrane protein -
  NMBB_RS14790 (NMBB_0563A) - 543631..544056 (-) 426 WP_021438256.1 hypothetical protein -
  NMBB_RS02820 (NMBB_0564) queC 544161..544820 (+) 660 WP_002217873.1 7-cyano-7-deazaguanine synthase QueC -
  NMBB_RS02825 (NMBB_0565) - 544848..545366 (+) 519 WP_002214425.1 DUF1543 domain-containing protein -
  NMBB_RS02830 (NMBB_0566) queD 545373..545795 (+) 423 WP_002222912.1 6-carboxytetrahydropterin synthase QueD -
  NMBB_RS02835 (NMBB_0568) - 546064..546435 (+) 372 WP_002236744.1 DUF1304 domain-containing protein -
  NMBB_RS02840 (NMBB_0569) - 546432..547070 (+) 639 WP_002236745.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10144.82 Da        Isoelectric Point: 6.2138

>NTDB_id=38600 NMBB_RS02805 WP_002245932.1 542088..542369(+) (comA) [Neisseria meningitidis alpha710]
MIHEEICAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDEATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=38600 NMBB_RS02805 WP_002245932.1 542088..542369(+) (comA) [Neisseria meningitidis alpha710]
ATGATTCACGAAGAAATCTGCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCTCGTGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGAAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCTGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(15-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

46.154

97.849

0.452
  comA Streptococcus mitis NCTC 12261

45.055

97.849

0.441
  comA Streptococcus pneumoniae Rx1

45.055

97.849

0.441
  comA Streptococcus pneumoniae D39

45.055

97.849

0.441
  comA Streptococcus pneumoniae TIGR4

45.055

97.849

0.441
  comA Streptococcus pneumoniae R6

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

47.126

93.548

0.441
  comA Streptococcus gordonii str. Challis substr. CH1

43.956

97.849

0.43