Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F0T12_RS08175 Genome accession   NZ_CP043812
Coordinates   1593329..1594825 (-) Length   498 a.a.
NCBI ID   WP_003697442.1    Uniprot ID   Q5F6K1
Organism   Neisseria gonorrhoeae strain NG290     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1588329..1599825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS08140 (F0T12_09110) mraZ 1588437..1588892 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  F0T12_RS08145 (F0T12_09115) - 1589171..1590418 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  F0T12_RS08160 (F0T12_09130) - 1590859..1591680 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  F0T12_RS08165 (F0T12_09135) dsbA1 1591713..1592357 (-) 645 WP_047918176.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  F0T12_RS08170 (F0T12_09140) ftsN 1592360..1593223 (-) 864 WP_172616882.1 cell division protein FtsN -
  F0T12_RS08175 (F0T12_09145) comM 1593329..1594825 (-) 1497 WP_003697442.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F0T12_RS08180 (F0T12_09150) - 1594839..1595159 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  F0T12_RS08185 (F0T12_09160) putP 1595647..1597173 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53299.30 Da        Isoelectric Point: 6.8963

>NTDB_id=385925 F0T12_RS08175 WP_003697442.1 1593329..1594825(-) (comM) [Neisseria gonorrhoeae strain NG290]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHSARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
AEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHGASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARGKQYARQGKVNAALSVSELDSQACIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=385925 F0T12_RS08175 WP_003697442.1 1593329..1594825(-) (comM) [Neisseria gonorrhoeae strain NG290]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTTGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTAAAGGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCTGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATAGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCACCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGTTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCTCATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACTCTGCCCGCCTTGCTTTGGAAATCGCCGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACAGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
GCCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACGGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGCTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAGGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCTGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGTGTCGCGCGTTACCGAAGCA
AAATTTCCGGTCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGTGCGTCCGTTTTGGAACGCGTCATCGCCGCCCGCGGCAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCTGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGTAGCCTGC
TGGAAAAATTGTCTCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGCTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

51.911

99.799

0.518
  comM Haemophilus influenzae Rd KW20

49.299

100

0.494
  comM Glaesserella parasuis strain SC1401

48.611

100

0.492
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.346

100

0.428

Multiple sequence alignment