Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F1538_RS04270 Genome accession   NZ_CP043771
Coordinates   857832..859361 (+) Length   509 a.a.
NCBI ID   WP_005693440.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE15/F3028     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 852832..864361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1538_RS04245 (F1538_04255) oppC 853178..854113 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  F1538_RS04250 (F1538_04260) - 854123..855094 (+) 972 WP_013526077.1 ABC transporter ATP-binding protein -
  F1538_RS04255 (F1538_04265) oppF 855091..856089 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  F1538_RS04260 (F1538_04270) - 856129..856995 (-) 867 WP_013526078.1 VirK/YbjX family protein -
  F1538_RS04265 (F1538_04275) yihA 857100..857717 (+) 618 WP_013526079.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  F1538_RS04270 (F1538_04280) comM 857832..859361 (+) 1530 WP_005693440.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F1538_RS04275 (F1538_04285) deoC 859395..860066 (-) 672 WP_013526080.1 deoxyribose-phosphate aldolase -
  F1538_RS04280 (F1538_04290) - 860177..860680 (+) 504 WP_013526081.1 protein disulfide oxidoreductase -
  F1538_RS04285 (F1538_04295) rfaD 860733..861659 (+) 927 WP_006996551.1 ADP-glyceromanno-heptose 6-epimerase -
  F1538_RS04290 (F1538_04300) waaF 861745..862785 (+) 1041 WP_013526082.1 lipopolysaccharide heptosyltransferase II -
  F1538_RS04295 (F1538_04305) - 862894..864117 (-) 1224 WP_013526083.1 MFS transporter -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55871.35 Da        Isoelectric Point: 9.7683

>NTDB_id=385799 F1538_RS04270 WP_005693440.1 857832..859361(+) (comM) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASHLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=385799 F1538_RS04270 WP_005693440.1 857832..859361(+) (comM) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTTGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACTGTAAATCTTGCACCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATCGCCATCGGAATTTTAGCCGCATCAGATCAGCTTGATGCGAGCCACTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTGACGGGCCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATTGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTGCCT
GAGATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACACCATAGTGCGTCAATGCCGGCTTTAGTTGGTGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTGCTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCCAATGCAAAAATTCAATTCCCAGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGCACTTCGCCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCACAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.607

100

0.996
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment