Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F0220_RS30165 Genome accession   NZ_CP043761
Coordinates   7054343..7054828 (-) Length   161 a.a.
NCBI ID   WP_017691432.1    Uniprot ID   A0A5M9UHS8
Organism   Paenibacillus sp. 37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7049343..7059828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0220_RS30140 opp4B 7049563..7050525 (-) 963 WP_036611942.1 oligopeptide ABC transporter permease -
  F0220_RS30145 - 7050533..7051465 (-) 933 WP_017691436.1 ABC transporter ATP-binding protein -
  F0220_RS30150 - 7051480..7052469 (-) 990 WP_091013183.1 ABC transporter ATP-binding protein -
  F0220_RS30155 - 7053199..7053786 (-) 588 WP_105600631.1 M15 family metallopeptidase -
  F0220_RS30160 rpsR 7054014..7054286 (-) 273 WP_017691433.1 30S ribosomal protein S18 -
  F0220_RS30165 ssbA 7054343..7054828 (-) 486 WP_017691432.1 single-stranded DNA-binding protein Machinery gene
  F0220_RS30170 rpsF 7054877..7055170 (-) 294 WP_036611944.1 30S ribosomal protein S6 -
  F0220_RS30175 - 7055373..7055567 (+) 195 WP_149846879.1 YjzC family protein -
  F0220_RS30185 - 7056199..7056408 (-) 210 WP_105600632.1 DUF951 domain-containing protein -
  F0220_RS30190 - 7056398..7057339 (-) 942 WP_105600634.1 mechanosensitive ion channel family protein -
  F0220_RS30195 - 7057354..7057617 (-) 264 WP_017691427.1 DUF3343 domain-containing protein -
  F0220_RS30200 yyaC 7057735..7058340 (+) 606 WP_091012199.1 spore protease YyaC -
  F0220_RS30205 - 7058315..7058815 (-) 501 WP_036671879.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17806.63 Da        Isoelectric Point: 4.8369

>NTDB_id=385734 F0220_RS30165 WP_017691432.1 7054343..7054828(-) (ssbA) [Paenibacillus sp. 37]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEKEADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNSGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=385734 F0220_RS30165 WP_017691432.1 7054343..7054828(-) (ssbA) [Paenibacillus sp. 37]
TTGTTGAACCGTGTCATTCTGATCGGACGGTTAACCCGGGATCCTGAGTTGCGTTACACTCCAGCAGGAGTAGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAAAAGGAAGCCGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCCGAGACTTGTGCGAACTACTTGCGCAAAGGACGCCTGGCTGCAGTCGAAGGACGCATTCAAGTACGG
AACTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTTATTGCCGATAATGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAACAGCGGTGGCGGCGGTGGGCAACCAATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGACGCGCGAACAATA
ACAATAATTCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9UHS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

49.133

100

0.528
  ssb Neisseria meningitidis MC58

33.889

100

0.379
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.565

0.379
  ssb Neisseria gonorrhoeae MS11

33.146

100

0.366

Multiple sequence alignment