Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NMV_RS09450 Genome accession   NC_017501
Coordinates   1833018..1833299 (-) Length   93 a.a.
NCBI ID   WP_002234641.1    Uniprot ID   -
Organism   Neisseria meningitidis 8013     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828018..1838299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS09415 (NMV_1899) - 1828317..1828955 (-) 639 WP_014574192.1 7-carboxy-7-deazaguanine synthase QueE -
  NMV_RS09420 (NMV_1900) - 1828952..1829323 (-) 372 WP_014574193.1 DUF1304 domain-containing protein -
  NMV_RS09425 (NMV_1901) queD 1829592..1830014 (-) 423 WP_002222912.1 6-carboxytetrahydropterin synthase QueD -
  NMV_RS09430 (NMV_1902) - 1830021..1830539 (-) 519 WP_002222913.1 DUF1543 domain-containing protein -
  NMV_RS09435 (NMV_1903) queC 1830567..1831226 (-) 660 WP_002222914.1 7-cyano-7-deazaguanine synthase QueC -
  NMV_RS16370 - 1831430..1831616 (-) 187 Protein_1764 NAD(P)H-quinone oxidoreductase -
  NMV_RS09445 (NMV_1904) - 1831771..1832997 (+) 1227 WP_002234642.1 YihY family inner membrane protein -
  NMV_RS09450 (NMV_1905) comA 1833018..1833299 (-) 282 WP_002234641.1 ATP-binding cassette domain-containing protein Regulator
  NMV_RS14805 - 1833378..1833512 (-) 135 Protein_1767 IS1595 family transposase -
  NMV_RS09455 (NMV_1906) - 1833511..1833969 (-) 459 WP_002214429.1 hypothetical protein -
  NMV_RS15230 (NMV_1909) - 1834533..1834736 (-) 204 WP_002261355.1 hypothetical protein -
  NMV_RS09470 (NMV_1912) - 1835301..1836236 (-) 936 WP_002246836.1 immunity 49 family protein -
  NMV_RS15235 - 1836239..1836412 (-) 174 WP_153960904.1 hypothetical protein -
  NMV_RS13390 - 1836441..1836679 (+) 239 Protein_1772 IS30 family transposase -
  NMV_RS09475 (NMV_1914) - 1836747..1837181 (-) 435 WP_010980984.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10086.79 Da        Isoelectric Point: 6.7077

>NTDB_id=38567 NMV_RS09450 WP_002234641.1 1833018..1833299(-) (comA) [Neisseria meningitidis 8013]
MIHEEICAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=38567 NMV_RS09450 WP_002234641.1 1833018..1833299(-) (comA) [Neisseria meningitidis 8013]
ATGATTCACGAAGAAATCTGCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(15-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419

Multiple sequence alignment