Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   F1C79_RS13545 Genome accession   NZ_CP043626
Coordinates   2997332..2997967 (-) Length   211 a.a.
NCBI ID   WP_017519262.1    Uniprot ID   A0A1B8V541
Organism   Pseudomonas denitrificans (nom. rej.) strain BG1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2992332..3002967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C79_RS13515 (F1C79_13515) murB 2993387..2994406 (-) 1020 WP_151187738.1 UDP-N-acetylmuramate dehydrogenase -
  F1C79_RS13520 (F1C79_13520) - 2994403..2994867 (-) 465 WP_151187739.1 low molecular weight protein-tyrosine-phosphatase -
  F1C79_RS13525 (F1C79_13525) kdsB 2994867..2995631 (-) 765 WP_138214925.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  F1C79_RS13530 (F1C79_13530) - 2995636..2995821 (-) 186 WP_081519465.1 Trm112 family protein -
  F1C79_RS13535 (F1C79_13535) lpxK 2995888..2996886 (-) 999 WP_151187740.1 tetraacyldisaccharide 4'-kinase -
  F1C79_RS13540 (F1C79_13540) - 2996886..2997335 (-) 450 WP_045211644.1 biopolymer transporter ExbD -
  F1C79_RS13545 (F1C79_13545) exbB 2997332..2997967 (-) 636 WP_017519262.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  F1C79_RS13550 (F1C79_13550) comA 2998039..3000249 (-) 2211 WP_151189707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  F1C79_RS13555 (F1C79_13555) - 3000402..3000932 (+) 531 WP_081519462.1 DUF2062 domain-containing protein -
  F1C79_RS13560 (F1C79_13560) - 3000993..3002240 (-) 1248 WP_081519461.1 lipoprotein-releasing ABC transporter permease subunit -
  F1C79_RS13565 (F1C79_13565) lolD 3002252..3002950 (-) 699 WP_017519266.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.24 Da        Isoelectric Point: 7.2806

>NTDB_id=385530 F1C79_RS13545 WP_017519262.1 2997332..2997967(-) (exbB) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=385530 F1C79_RS13545 WP_017519262.1 2997332..2997967(-) (exbB) [Pseudomonas denitrificans (nom. rej.) strain BG1]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGCTTGAGCCGTGTGGCCCCGCCGCAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCGTCTTCCCCGCTGGGTGAAATCCTTGCCGCTGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCGTCCCGCGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGTACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCGGCC
GGCCTGATCGTGGCGATCCCGGCAGTGTTCTTCCACCGTTACCTGCTGCGCCGCGTCGATGAACTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGATCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8V541

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment