Detailed information NTG0385272

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG581_RS02285
• Genome accession: NZ_CP051535
• Coordinates: 477686..478885 (+)
• Length: 399 a.a.
• NCBI ID: WP_202138304.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 472686..483885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG581_RS07945	-	474768..474902 (+)	135	WP_077654653.1	type IV secretion system protein VirB7	-
HG581_RS02275 (HG581_02270)	-	474895..476061 (+)	1167	WP_202138302.1	VirB8/TrbF family protein	-
HG581_RS02280 (HG581_02275)	-	476058..477689 (+)	1632	WP_202138303.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG581_RS02285 (HG581_02280)	comB10	477686..478885 (+)	1200	WP_202138304.1	DNA type IV secretion system protein ComB10	Machinery gene
HG581_RS02290 (HG581_02285)	-	478869..481112 (+)	2244	WP_202138305.1	collagen-like protein	-
HG581_RS02295 (HG581_02290)	-	481125..482096 (+)	972	WP_202138306.1	hypothetical protein	-
HG581_RS02300 (HG581_02295)	-	482114..482386 (+)	273	WP_202138307.1	hypothetical protein	-
HG581_RS02305 (HG581_02300)	-	482391..483335 (+)	945	WP_000365304.1	CpaF/VirB11 family protein	-
HG581_RS02310 (HG581_02305)	-	483332..483850 (+)	519	WP_202138308.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44556.09 Da
• Isoelectric Point: 9.9438

>NTDB_id=385272 HG581_RS02285 WP_202138304.1 477686..478885(+) (comB10) [Helicobacter pylori strain LIM-008]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNSLNRQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATNPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKHLITTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=385272 HG581_RS02285 WP_202138304.1 477686..478885(+) (comB10) [Helicobacter pylori strain LIM-008]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAATAGTCTAAACAGGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAGGAACAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCCACTAATCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAACGAGCATAAGCTCTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTGAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACGATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACACCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.652	99.499	0.534