Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F0316_RS13700 Genome accession   NZ_CP043554
Coordinates   2925130..2926653 (+) Length   507 a.a.
NCBI ID   WP_148530777.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2920130..2931653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS13685 (F0316_13685) ilvE 2921702..2922640 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  F0316_RS13690 (F0316_13690) ilvM 2922652..2922936 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  F0316_RS13695 (F0316_13695) ilvG 2922948..2924594 (-) 1647 WP_149560555.1 acetolactate synthase 2 catalytic subunit -
  F0316_RS13700 (F0316_13700) comM 2925130..2926653 (+) 1524 WP_148530777.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F0316_RS13705 (F0316_13705) - 2926743..2927627 (+) 885 WP_042987770.1 acyltransferase -
  F0316_RS13710 (F0316_13710) - 2927705..2928307 (-) 603 WP_000732281.1 thiol:disulfide interchange protein DsbA/DsbL -
  F0316_RS13715 (F0316_13715) - 2928338..2929324 (-) 987 WP_000189623.1 serine/threonine protein kinase -
  F0316_RS13720 (F0316_13720) ccoG 2929372..2930796 (-) 1425 WP_000076155.1 cytochrome c oxidase accessory protein CcoG -
  F0316_RS13725 (F0316_13725) - 2931197..2931463 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55076.21 Da        Isoelectric Point: 8.3602

>NTDB_id=385075 F0316_RS13700 WP_148530777.1 2925130..2926653(+) (comM) [Vibrio cholerae strain RFB16]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQIRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=385075 F0316_RS13700 WP_148530777.1 2925130..2926653(+) (comM) [Vibrio cholerae strain RFB16]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTTCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTAAGTCA
GATCCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGCTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCAGAGTTTGAGCGTAAAGTACTTGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGTGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCATTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGCCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.606

100

0.996
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.147

100

0.653
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment