Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | F0316_RS04640 | Genome accession | NZ_CP043554 |
| Coordinates | 966128..966439 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain RFB16 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 961128..971439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0316_RS04625 (F0316_04625) | lon | 961165..963525 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| F0316_RS04630 (F0316_04630) | - | 963709..963981 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| F0316_RS04635 (F0316_04635) | ppiD | 964134..965993 (+) | 1860 | WP_148520228.1 | peptidylprolyl isomerase | - |
| F0316_RS04640 (F0316_04640) | comEA | 966128..966439 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| F0316_RS04645 (F0316_04645) | cmk | 966622..967299 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| F0316_RS04650 (F0316_04650) | rpsA | 967408..969078 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| F0316_RS04655 (F0316_04655) | tnpA | 969245..969682 (+) | 438 | WP_142740806.1 | IS200/IS605-like element IS1004 family transposase | - |
| F0316_RS04660 (F0316_04660) | ihfB | 969989..970267 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| F0316_RS04665 (F0316_04665) | - | 970406..970687 (+) | 282 | WP_000691492.1 | LapA family protein | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=385051 F0316_RS04640 WP_001166105.1 966128..966439(+) (comEA) [Vibrio cholerae strain RFB16]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=385051 F0316_RS04640 WP_001166105.1 966128..966439(+) (comEA) [Vibrio cholerae strain RFB16]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |