Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F0R74_RS07745 Genome accession   NZ_CP043550
Coordinates   1577998..1578891 (-) Length   297 a.a.
NCBI ID   WP_149368886.1    Uniprot ID   -
Organism   Francisella marina strain E103-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1572998..1583891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0R74_RS07735 (F0R74_07735) - 1573725..1574243 (-) 519 WP_149368884.1 hypothetical protein -
  F0R74_RS07740 (F0R74_07740) - 1574255..1577929 (-) 3675 WP_149368885.1 hypothetical protein -
  F0R74_RS07745 (F0R74_07745) comM 1577998..1578891 (-) 894 WP_149368886.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F0R74_RS07750 (F0R74_07750) - 1578893..1579087 (-) 195 WP_012280351.1 accessory factor UbiK family protein -
  F0R74_RS07755 (F0R74_07755) - 1579163..1580614 (-) 1452 WP_149368887.1 NADH-quinone oxidoreductase subunit N -
  F0R74_RS07760 (F0R74_07760) - 1580630..1582219 (-) 1590 WP_149368888.1 NuoM family protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32039.95 Da        Isoelectric Point: 6.4960

>NTDB_id=385023 F0R74_RS07745 WP_149368886.1 1577998..1578891(-) (comM) [Francisella marina strain E103-15]
MSLAILKSRAQLGIEAPLVSIEVHLSNALPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQINIVRDVEDFEFAGELSLGGELRKISSAIPMAIKCVANNKKLVIPIHNEKEIALVEDVCAYSFET
LKEIVDFLSGDDKASVEQLQEIDFERLYSDLEDVKGQYQARRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLDK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGCQFQQLMLISSNYC

Nucleotide


Download         Length: 894 bp        

>NTDB_id=385023 F0R74_RS07745 WP_149368886.1 1577998..1578891(-) (comM) [Francisella marina strain E103-15]
ATGTCTTTAGCAATTCTAAAAAGTCGAGCTCAATTGGGTATTGAAGCACCGCTTGTCTCGATAGAAGTTCATTTGTCAAA
TGCTCTGCCTGGCTTATCAATAGTAGGCTTACCAGAGGCAGCTGTCAAAGAGAGCAAAGATCGTGTTAGAAGTGCTATCA
TAAACTCGGGATTTAATTTTCCAAATAAACGTATCACAATTAATCTTGCCCCTGCAGACTTACCTAAGAGTAGTGGAAGA
TTTGATTTGCCTATAGCATTAGGTATTTTATATGCATCGGGCCAAATAAATATTGTTAGAGATGTTGAAGATTTCGAGTT
TGCTGGAGAGTTGTCTCTAGGTGGTGAGCTTAGGAAAATTTCTAGTGCGATACCGATGGCTATTAAGTGTGTTGCGAATA
ACAAAAAGCTTGTGATACCTATTCATAATGAAAAAGAGATTGCTTTAGTTGAAGATGTTTGTGCTTATTCTTTTGAGACT
CTAAAAGAAATCGTAGATTTTTTATCTGGTGACGATAAAGCTTCGGTAGAACAATTACAAGAAATTGACTTTGAGAGACT
GTATTCTGATTTAGAAGATGTAAAAGGACAATATCAGGCTAGACGCGCTTTGGAAATTGCAGCAGCAGGTGGTCATAATA
TTCTTTTAGTTGGTCCACCGGGAACTGGTAAGACTATGCTTGCTAGTAGGCTTAATTCTATTTTGCCACCATTAGACAAG
AAAGAAGCCCTTTCATCAGCGATGATTGCTTCAATTAAAGGTGAATCAGGGATAGCAGAAAGTTTTTATAAAAGACCATT
TCGTCATCCTCATCATACTTCTTCAGGTGTTTCTTTGGTTGGAGGTGGTTGTCAATTCCAACAATTAATGCTAATTTCCA
GTAATTATTGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.431

96.97

0.508
  comM Vibrio campbellii strain DS40M4

52.982

95.96

0.508
  comM Glaesserella parasuis strain SC1401

51.042

96.97

0.495
  comM Haemophilus influenzae Rd KW20

50.173

97.306

0.488
  comM Legionella pneumophila str. Paris

48.944

95.623

0.468
  comM Legionella pneumophila strain ERS1305867

48.944

95.623

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.479

95.623

0.444

Multiple sequence alignment