Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F0H33_RS01810 Genome accession   NZ_CP043500
Coordinates   405597..407117 (-) Length   506 a.a.
NCBI ID   WP_058364401.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain P3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 400597..412117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0H33_RS01795 (F0H33_01795) - 401970..402809 (+) 840 WP_058364400.1 alpha/beta hydrolase -
  F0H33_RS01800 (F0H33_01800) - 403212..404300 (+) 1089 WP_230938672.1 lipocalin family protein -
  F0H33_RS01805 (F0H33_01805) - 404357..405454 (+) 1098 WP_038238601.1 lipocalin-like domain-containing protein -
  F0H33_RS01810 (F0H33_01810) comM 405597..407117 (-) 1521 WP_058364401.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F0H33_RS01815 (F0H33_01815) - 407131..407400 (-) 270 WP_009595755.1 accessory factor UbiK family protein -
  F0H33_RS20070 - 407399..407551 (+) 153 WP_155522278.1 hypothetical protein -
  F0H33_RS01820 (F0H33_01820) - 407577..407915 (+) 339 WP_003470346.1 P-II family nitrogen regulator -
  F0H33_RS01825 (F0H33_01825) - 408312..409888 (+) 1577 Protein_355 beta-N-acetylglucosaminidase domain-containing protein -
  F0H33_RS01830 (F0H33_01830) - 410083..410265 (-) 183 WP_139115874.1 hypothetical protein -
  F0H33_RS01835 (F0H33_01835) speE 410322..411173 (-) 852 WP_003470348.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53514.21 Da        Isoelectric Point: 8.5177

>NTDB_id=384616 F0H33_RS01810 WP_058364401.1 405597..407117(-) (comM) [Xanthomonas translucens pv. undulosa strain P3]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQACTARTL
LEVCALLNGSKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIAYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=384616 F0H33_RS01810 WP_058364401.1 405597..407117(-) (comM) [Xanthomonas translucens pv. undulosa strain P3]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCAGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAATCTGGCACCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATCGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCAGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTGCACTGCGCGCACCCTG
CTAGAAGTCTGCGCGCTGTTGAACGGCAGCAAGACTCTGCCCGCCGCCGAAGCCCTGCCGGCCGCGGCCACACCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGCGCATTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCACGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCGCTGCACCGCATCCTGCGCGTGGCCCGCACCATTGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAGGCGATCGCGTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.112

98.617

0.553
  comM Vibrio campbellii strain DS40M4

54.582

99.209

0.542
  comM Haemophilus influenzae Rd KW20

53.968

99.605

0.538
  comM Glaesserella parasuis strain SC1401

53.175

99.605

0.53
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447

Multiple sequence alignment