Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F0U60_RS09105 | Genome accession | NZ_CP043494 |
| Coordinates | 2230657..2231169 (+) | Length | 170 a.a. |
| NCBI ID | WP_395816712.1 | Uniprot ID | - |
| Organism | Archangium minus strain Cbm 6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2225657..2236169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0U60_RS09090 (F0U60_09155) | - | 2226247..2227167 (+) | 921 | WP_395816705.1 | tol-pal system YbgF family protein | - |
| F0U60_RS09095 (F0U60_09160) | - | 2227217..2228008 (+) | 792 | WP_395816708.1 | SDR family oxidoreductase | - |
| F0U60_RS09100 (F0U60_09165) | dacB | 2228232..2230472 (+) | 2241 | WP_395825142.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| F0U60_RS09105 (F0U60_09170) | ssb | 2230657..2231169 (+) | 513 | WP_395816712.1 | single-stranded DNA-binding protein | Machinery gene |
| F0U60_RS09110 (F0U60_09175) | - | 2231270..2231986 (-) | 717 | WP_395816714.1 | succinate dehydrogenase | - |
| F0U60_RS09115 (F0U60_09180) | - | 2232242..2233141 (+) | 900 | WP_395816717.1 | Hsp33 family molecular chaperone HslO | - |
| F0U60_RS09120 (F0U60_09185) | - | 2233236..2233907 (+) | 672 | WP_395816719.1 | phosphoribosyltransferase | - |
| F0U60_RS09125 (F0U60_09190) | selB | 2233930..2235846 (+) | 1917 | WP_395816722.1 | selenocysteine-specific translation elongation factor | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 17816.49 Da Isoelectric Point: 5.2866
>NTDB_id=384590 F0U60_RS09105 WP_395816712.1 2230657..2231169(+) (ssb) [Archangium minus strain Cbm 6]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGASGGGGGGGGRGYSQQRGGGQQQGGGGYDDYGPPPMGMDEGGGGG
NGGGDDDIPF
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGASGGGGGGGGRGYSQQRGGGQQQGGGGYDDYGPPPMGMDEGGGGG
NGGGDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=384590 F0U60_RS09105 WP_395816712.1 2230657..2231169(+) (ssb) [Archangium minus strain Cbm 6]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTCGGCGCGGACCCGGAGGTGCGCTTTACCCCGGGCGGCCA
GGCGGTCGCCAACTTCCGCATCGCGACCAGCGATACCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTCGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGTCGCCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGACGGCGCCGGAGCGAGCGGTGGTGGGGGTGGTGGTGGCGGCCGCGGCTACTCGCAGCAGCGTGGCG
GGGGCCAGCAGCAGGGCGGCGGCGGGTACGACGACTACGGCCCTCCCCCCATGGGCATGGACGAGGGCGGTGGCGGTGGC
AACGGCGGCGGGGACGACGACATCCCGTTCTAG
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTCGGCGCGGACCCGGAGGTGCGCTTTACCCCGGGCGGCCA
GGCGGTCGCCAACTTCCGCATCGCGACCAGCGATACCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTCGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGTCGCCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTCGGCGGCCGTGACGGCGCCGGAGCGAGCGGTGGTGGGGGTGGTGGTGGCGGCCGCGGCTACTCGCAGCAGCGTGGCG
GGGGCCAGCAGCAGGGCGGCGGCGGGTACGACGACTACGGCCCTCCCCCCATGGGCATGGACGAGGGCGGTGGCGGTGGC
AACGGCGGCGGGGACGACGACATCCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.826 |
100 |
0.518 |
| ssb | Neisseria meningitidis MC58 |
44.571 |
100 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
44.571 |
100 |
0.459 |
| ssb | Glaesserella parasuis strain SC1401 |
39.572 |
100 |
0.435 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.376 |