Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HELO_RS01390 | Genome accession | NC_014532 |
| Coordinates | 302762..303379 (+) | Length | 205 a.a. |
| NCBI ID | WP_013331020.1 | Uniprot ID | E1V5N6 |
| Organism | Halomonas elongata DSM 2581 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 297762..308379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HELO_RS01380 (HELO_1263) | uvrA | 298255..301116 (-) | 2862 | WP_013331018.1 | excinuclease ABC subunit UvrA | - |
| HELO_RS01385 (HELO_1264) | - | 301274..302668 (+) | 1395 | WP_013331019.1 | MFS transporter | - |
| HELO_RS01390 (HELO_1265) | ssb | 302762..303379 (+) | 618 | WP_013331020.1 | single-stranded DNA-binding protein | Machinery gene |
| HELO_RS19310 (HELO_1266) | - | 303464..304630 (-) | 1167 | WP_013331021.1 | arylamine N-acetyltransferase | - |
| HELO_RS01400 (HELO_1267) | - | 304874..305767 (+) | 894 | WP_041601836.1 | sugar nucleotide-binding protein | - |
| HELO_RS01405 (HELO_1268) | - | 305764..306528 (+) | 765 | WP_013331023.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| HELO_RS01410 (HELO_1269) | fabB | 306611..307825 (-) | 1215 | WP_013331024.1 | beta-ketoacyl-ACP synthase I | - |
| HELO_RS01415 (HELO_1270) | fabA | 307839..308354 (-) | 516 | WP_013331025.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA | - |
Sequence
Protein
Download Length: 205 a.a. Molecular weight: 22287.25 Da Isoelectric Point: 4.9464
>NTDB_id=38404 HELO_RS01390 WP_013331020.1 302762..303379(+) (ssb) [Halomonas elongata DSM 2581]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWTDRQSGQRQERTEWHRVVMFNKLAEISQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGEMGGAPQGGFGGGQPQQQQQGGFGGQPQQQPQGGFGGQPQQPPQQQ
GGNYGGGQPQRPPQQPAPNQGGQQGGNYGAPDPGSFDDFDDEIPF
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWTDRQSGQRQERTEWHRVVMFNKLAEISQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGEMGGAPQGGFGGGQPQQQQQGGFGGQPQQQPQGGFGGQPQQPPQQQ
GGNYGGGQPQRPPQQPAPNQGGQQGGNYGAPDPGSFDDFDDEIPF
Nucleotide
Download Length: 618 bp
>NTDB_id=38404 HELO_RS01390 WP_013331020.1 302762..303379(+) (ssb) [Halomonas elongata DSM 2581]
ATGGCCCGTGGCGTCAACAAGGTCATACTCATCGGCAACCTCGGGCAGGACCCGGAAGTGCGCTTCACGCCCTCCGGTAC
CGCGGTGGCCAACCTCAACCTGGCAACCACCGATACCTGGACCGACCGTCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGGGTGGTGATGTTCAACAAGCTGGCCGAGATTTCCCAGCAGTACCTGCGCAAGGGCTCCAAGGTGTATATCGAG
GGGCGCCTGCAGACTCGCAAGTGGCAGGACCAGAACGGTCAGGACCGATACAGCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCGCGCGGCGGCGAGATGGGCGGCGCCCCGCAGGGTGGCTTCGGTGGCGGCCAGCCGCAGCAGCAACAGC
AGGGCGGCTTTGGTGGCCAGCCCCAGCAGCAGCCGCAAGGTGGTTTCGGCGGCCAGCCGCAGCAACCGCCGCAGCAGCAA
GGTGGCAACTACGGCGGTGGTCAGCCGCAGCGTCCGCCGCAGCAGCCGGCCCCCAACCAGGGTGGCCAGCAGGGCGGCAA
CTATGGTGCCCCCGACCCGGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTAA
ATGGCCCGTGGCGTCAACAAGGTCATACTCATCGGCAACCTCGGGCAGGACCCGGAAGTGCGCTTCACGCCCTCCGGTAC
CGCGGTGGCCAACCTCAACCTGGCAACCACCGATACCTGGACCGACCGTCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGGGTGGTGATGTTCAACAAGCTGGCCGAGATTTCCCAGCAGTACCTGCGCAAGGGCTCCAAGGTGTATATCGAG
GGGCGCCTGCAGACTCGCAAGTGGCAGGACCAGAACGGTCAGGACCGATACAGCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACTCGCGCGGCGGCGAGATGGGCGGCGCCCCGCAGGGTGGCTTCGGTGGCGGCCAGCCGCAGCAGCAACAGC
AGGGCGGCTTTGGTGGCCAGCCCCAGCAGCAGCCGCAAGGTGGTTTCGGCGGCCAGCCGCAGCAACCGCCGCAGCAGCAA
GGTGGCAACTACGGCGGTGGTCAGCCGCAGCGTCCGCCGCAGCAGCCGGCCCCCAACCAGGGTGGCCAGCAGGGCGGCAA
CTATGGTGCCCCCGACCCGGGCAGCTTCGACGACTTCGACGACGAGATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
51.923 |
100 |
0.527 |
| ssb | Glaesserella parasuis strain SC1401 |
49.02 |
99.512 |
0.488 |
| ssb | Neisseria meningitidis MC58 |
44.335 |
99.024 |
0.439 |
| ssb | Neisseria gonorrhoeae MS11 |
44.059 |
98.537 |
0.434 |