Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HGK49_RS00505 Genome accession   NZ_CP051434
Coordinates   100002..100469 (-) Length   155 a.a.
NCBI ID   WP_180615665.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-004     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 95002..105469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK49_RS00490 (HGK49_00485) - 95414..96196 (-) 783 WP_202132953.1 glycosyltransferase family 2 protein -
  HGK49_RS00495 (HGK49_00490) tlpB 96227..97924 (-) 1698 WP_202132954.1 methyl-accepting chemotaxis protein TlpB -
  HGK49_RS00500 (HGK49_00495) - 98127..99866 (-) 1740 WP_202132955.1 5'-nucleotidase C-terminal domain-containing protein -
  HGK49_RS00505 (HGK49_00500) luxS 100002..100469 (-) 468 WP_180615665.1 S-ribosylhomocysteine lyase Regulator
  HGK49_RS00510 (HGK49_00505) - 100504..101646 (-) 1143 WP_202132956.1 cystathionine gamma-synthase -
  HGK49_RS00515 (HGK49_00510) - 101667..102584 (-) 918 WP_202132957.1 O-acetylserine-dependent cystathionine beta-synthase -
  HGK49_RS00520 (HGK49_00515) - 102692..103266 (+) 575 Protein_94 hypothetical protein -
  HGK49_RS00525 (HGK49_00520) dnaK 103404..105266 (-) 1863 WP_000521035.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17696.21 Da        Isoelectric Point: 6.8403

>NTDB_id=383584 HGK49_RS00505 WP_180615665.1 100002..100469(-) (luxS) [Helicobacter pylori strain ASHA-004]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLVRAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=383584 HGK49_RS00505 WP_180615665.1 100002..100469(-) (luxS) [Helicobacter pylori strain ASHA-004]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCCGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCCAGTTATGTTGTAGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGTGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment