Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FY406_RS04615 | Genome accession | NZ_CP043405 |
| Coordinates | 943723..944214 (+) | Length | 163 a.a. |
| NCBI ID | WP_003086647.1 | Uniprot ID | A0A7X9LEU4 |
| Organism | Streptococcus ratti strain ATCC 31377 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 938723..949214
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FY406_RS04590 (FY406_04590) | trxA | 939796..940110 (+) | 315 | WP_003086653.1 | thioredoxin | - |
| FY406_RS04600 (FY406_04600) | mutY | 940509..941660 (-) | 1152 | WP_003091485.1 | A/G-specific adenine glycosylase | - |
| FY406_RS04605 (FY406_04605) | - | 942513..943163 (+) | 651 | WP_003086650.1 | nitroreductase family protein | - |
| FY406_RS04610 (FY406_04610) | rpsF | 943415..943705 (+) | 291 | WP_003086648.1 | 30S ribosomal protein S6 | - |
| FY406_RS04615 (FY406_04615) | ssbA | 943723..944214 (+) | 492 | WP_003086647.1 | single-stranded DNA-binding protein | Machinery gene |
| FY406_RS04620 (FY406_04620) | rpsR | 944273..944512 (+) | 240 | WP_000068664.1 | 30S ribosomal protein S18 | - |
| FY406_RS04625 (FY406_04625) | hdrM | 944922..945626 (-) | 705 | WP_225310769.1 | LiaF domain-containing protein | Regulator |
| FY406_RS10535 | - | 945624..946022 (-) | 399 | Protein_873 | LytTR family DNA-binding domain-containing protein | - |
| FY406_RS04630 (FY406_04630) | - | 946116..946781 (-) | 666 | WP_003086641.1 | DUF1129 domain-containing protein | - |
| FY406_RS04635 (FY406_04635) | - | 947135..948079 (-) | 945 | WP_150881006.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18218.90 Da Isoelectric Point: 4.7187
>NTDB_id=383578 FY406_RS04615 WP_003086647.1 943723..944214(+) (ssbA) [Streptococcus ratti strain ATCC 31377]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREAQSGSYNTGGNFGGSNFSSQQDASQSQTPNFGRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREAQSGSYNTGGNFGGSNFSSQQDASQSQTPNFGRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=383578 FY406_RS04615 WP_003086647.1 943723..944214(+) (ssbA) [Streptococcus ratti strain ATCC 31377]
ATGATTAATAATGTAGTACTTGTTGGTCGCATGACTCGTGATGCTGAGCTTCGTTACACTCCAAGTAATCAAGCTGTTGC
AACTTTCACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGACTTCATTAATATCGTGATTT
GGCGCCAGCAGGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTACCCTGCTTGGAATTACAGGCCGTATTCAAACCCGT
AATTATGAAAATCAGCAGGGTCAGCGTGTTTATGTCACAGAGGTTGTTGCTGACAATTTCCAAATTTTGGAAAGCCGTGC
TACACGTGAAGCTCAATCGGGTAGTTATAATACTGGCGGCAATTTTGGCGGAAGTAATTTCTCTTCCCAGCAGGATGCTT
CACAATCACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAATCCAATGGACATTTCAGATGACGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTTGGTCGCATGACTCGTGATGCTGAGCTTCGTTACACTCCAAGTAATCAAGCTGTTGC
AACTTTCACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGACTTCATTAATATCGTGATTT
GGCGCCAGCAGGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTACCCTGCTTGGAATTACAGGCCGTATTCAAACCCGT
AATTATGAAAATCAGCAGGGTCAGCGTGTTTATGTCACAGAGGTTGTTGCTGACAATTTCCAAATTTTGGAAAGCCGTGC
TACACGTGAAGCTCAATCGGGTAGTTATAATACTGGCGGCAATTTTGGCGGAAGTAATTTCTCTTCCCAGCAGGATGCTT
CACAATCACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAATCCAATGGACATTTCAGATGACGAT
CTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.742 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.48 |
100 |
0.614 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.054 |
68.098 |
0.368 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
54.128 |
66.871 |
0.362 |