Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   FY406_RS04625 Genome accession   NZ_CP043405
Coordinates   944922..945626 (-) Length   234 a.a.
NCBI ID   WP_225310769.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 939922..950626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04600 (FY406_04600) mutY 940509..941660 (-) 1152 WP_003091485.1 A/G-specific adenine glycosylase -
  FY406_RS04605 (FY406_04605) - 942513..943163 (+) 651 WP_003086650.1 nitroreductase family protein -
  FY406_RS04610 (FY406_04610) rpsF 943415..943705 (+) 291 WP_003086648.1 30S ribosomal protein S6 -
  FY406_RS04615 (FY406_04615) ssbA 943723..944214 (+) 492 WP_003086647.1 single-stranded DNA-binding protein Machinery gene
  FY406_RS04620 (FY406_04620) rpsR 944273..944512 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  FY406_RS04625 (FY406_04625) hdrM 944922..945626 (-) 705 WP_225310769.1 LiaF domain-containing protein Regulator
  FY406_RS10535 - 945624..946022 (-) 399 Protein_873 LytTR family DNA-binding domain-containing protein -
  FY406_RS04630 (FY406_04630) - 946116..946781 (-) 666 WP_003086641.1 DUF1129 domain-containing protein -
  FY406_RS04635 (FY406_04635) - 947135..948079 (-) 945 WP_150881006.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26314.36 Da        Isoelectric Point: 6.7596

>NTDB_id=383579 FY406_RS04625 WP_225310769.1 944922..945626(-) (hdrM) [Streptococcus ratti strain ATCC 31377]
MKKGYLWYLLLLLLAVYFIAIAFVPSLHLILDGTLLLALLFGLFGLSKRNLILFFIGLGFLSIYLKDVFHFTYSTTPLFA
GIVLVGIVLHNLIIPRSSYTYKSKSTSHHHFENEKSASYIDNETDLYLRTFFSENTTYVSSKQLTNVYINTKFGEQSIDF
TQAQFMTDSPEIRLDIAFGQTNIRIPGNWRIVNKTSTPFASISFSGIPDTSSDSDIISVALTGTVALGEVDIQY

Nucleotide


Download         Length: 705 bp        

>NTDB_id=383579 FY406_RS04625 WP_225310769.1 944922..945626(-) (hdrM) [Streptococcus ratti strain ATCC 31377]
ATGAAAAAAGGGTACTTATGGTATTTGCTGCTATTGCTGCTCGCCGTTTATTTTATCGCTATCGCCTTCGTTCCCTCTCT
GCATCTGATTCTTGATGGCACGTTGCTTTTAGCCCTGCTCTTTGGCCTTTTTGGACTGAGCAAGCGCAATTTGATTTTGT
TCTTTATCGGATTGGGATTCTTAAGCATTTACCTTAAAGATGTCTTTCATTTTACCTACTCTACCACTCCGCTCTTTGCT
GGCATTGTTCTTGTCGGTATCGTCCTGCATAATCTGATTATCCCCCGCAGCTCCTATACTTATAAGAGCAAAAGCACTTC
CCATCACCATTTTGAAAACGAAAAAAGCGCCAGTTATATTGACAATGAAACCGATCTTTATCTTAGGACATTTTTTTCAG
AAAATACCACTTATGTTAGCTCCAAACAACTAACCAACGTTTACATCAACACTAAATTCGGCGAGCAGTCGATCGATTTC
ACTCAGGCACAATTTATGACTGATTCTCCTGAGATCCGGCTTGATATTGCCTTTGGTCAGACGAATATCCGTATCCCCGG
CAACTGGCGCATTGTCAATAAAACAAGCACTCCCTTTGCCTCCATTTCTTTTTCAGGCATCCCTGATACTAGCAGTGATA
GCGATATTATATCTGTTGCACTGACAGGCACAGTTGCCCTAGGAGAAGTTGATATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(131-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

58.12

100

0.581

Multiple sequence alignment