Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   FY406_RS04535 Genome accession   NZ_CP043405
Coordinates   925722..928013 (+) Length   763 a.a.
NCBI ID   WP_003086683.1    Uniprot ID   -
Organism   Streptococcus ratti strain ATCC 31377     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 920722..933013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS04510 (FY406_04510) serS 921041..922324 (-) 1284 WP_003086693.1 serine--tRNA ligase -
  FY406_RS04515 (FY406_04515) - 922673..923755 (+) 1083 WP_003086691.1 acyltransferase -
  FY406_RS04525 (FY406_04525) - 923969..924346 (-) 378 WP_003086687.1 DUF956 family protein -
  FY406_RS04530 (FY406_04530) - 924790..925146 (+) 357 WP_003086685.1 hypothetical protein -
  FY406_RS04535 (FY406_04535) comA/nlmT 925722..928013 (+) 2292 WP_003086683.1 peptide cleavage/export ABC transporter Regulator
  FY406_RS04540 (FY406_04540) - 928402..929328 (-) 927 WP_003086681.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  FY406_RS04545 (FY406_04545) - 929343..930161 (-) 819 WP_003086679.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  FY406_RS04550 (FY406_04550) - 930196..931188 (-) 993 WP_003086677.1 PTS sugar transporter subunit IIB -
  FY406_RS04555 (FY406_04555) - 931665..932138 (-) 474 WP_003086675.1 hypothetical protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 86112.42 Da        Isoelectric Point: 8.1492

>NTDB_id=383577 FY406_RS04535 WP_003086683.1 925722..928013(+) (comA/nlmT) [Streptococcus ratti strain ATCC 31377]
MNIFSYLLLTVVLVLLVNLFLEFIKDFFKTTPAMNKENSKKTSIFLWNRTRRFKFVPQIDSRDCGPAALASVAKHYGSDY
SLSHLRELTKTDQQGTTALGIIEAAKSIGFETYSLDADMSLFNYDDLIYPFIVHVVKNGRLQHYYVVYGDEEDSLIIGDP
DPSVKVVRMSKERFQHEWTGLAIFFSPRDDYQPQKDKRRGLTSFIPSFLKQKSLLIYIIMASLIITLVEIIGAFYLQVML
DEYIPSQKISTLGLVALGLIIIYVIQRIITFAKEYLLIVLGQRLTIDIILTYIKHIFTLPMSFFSTRRTGEITSRFTDAN
QIIDAMASTIFSIILDISTIVLVGGVLLIQNIFLFSLALVSIPIYIIIFFVFMKMFGYLNYEVMESSAMMSSSVIEDING
IETIKSLTSEEVSYQRIDKEFVIFLEKSFRLRKYGAIQTSIKTAAKLILNVIILWYGAKLVMSGKMSAGQMLTFNVLLGY
FSNPLENIINLQTKLQSAQVANTRLNEVYLVKSEFENDGEFSEVAFLDGDISFEKMSYKYGYGRDTISGINLTIPKGSKV
SIVGSSGSGKTTLAKLMVNFYEPNCGAVRINGYNLKVIDKTTLRQHISYLPQQAYIFSGTIMDNLILGAKEGTTHEDIIR
ACEIAEIRSDIEQMPLGYQTELSDSAGVSGGQKQRIALARALLTQAPVLILDEATSSLDVLTEKKIVNNLMAMTNKTIIF
VAHRLSIAQRTDWIIVMDQGRIVEKGSHKELLANKGFYYKLFN

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=383577 FY406_RS04535 WP_003086683.1 925722..928013(+) (comA/nlmT) [Streptococcus ratti strain ATCC 31377]
ATGAACATATTTTCTTATCTTCTTTTGACTGTAGTTTTGGTATTATTAGTCAATTTATTCTTAGAATTTATAAAAGACTT
TTTTAAAACAACTCCAGCAATGAATAAGGAAAATTCTAAAAAAACTTCAATTTTTTTGTGGAATCGAACTAGACGTTTTA
AATTTGTACCACAAATTGATAGTAGAGACTGTGGTCCAGCTGCCTTGGCTTCTGTTGCTAAGCACTACGGTTCAGATTAT
TCCTTGAGTCATTTGCGTGAACTTACAAAGACAGATCAACAAGGCACTACAGCATTGGGAATCATTGAAGCGGCTAAAAG
TATTGGATTTGAAACTTACTCGCTAGATGCTGATATGTCTTTATTTAATTATGATGACCTTATTTATCCTTTTATTGTTC
ACGTTGTTAAAAATGGACGTCTTCAACATTACTATGTTGTTTATGGCGATGAAGAGGATAGTCTAATCATCGGAGACCCA
GATCCTTCTGTCAAAGTTGTTCGCATGTCTAAGGAGAGATTTCAGCATGAATGGACGGGCCTAGCTATCTTCTTTTCTCC
CAGGGATGATTATCAGCCTCAAAAAGATAAAAGAAGAGGACTAACAAGTTTCATACCTTCTTTTTTAAAGCAAAAGAGCC
TCTTGATCTATATTATAATGGCGAGTTTAATTATTACTTTAGTAGAAATTATTGGAGCTTTTTATCTCCAAGTAATGCTG
GATGAGTATATTCCCAGTCAAAAAATTTCAACTTTGGGCCTTGTCGCTTTAGGATTGATAATAATCTATGTCATCCAACG
AATAATAACTTTTGCTAAAGAGTACTTATTAATTGTATTAGGGCAAAGGCTGACAATTGATATTATACTTACTTATATTA
AACACATTTTTACCCTTCCCATGTCTTTCTTTTCGACAAGACGAACAGGAGAAATCACTTCTCGTTTTACGGATGCCAAT
CAGATTATTGATGCTATGGCTTCAACGATCTTTTCAATTATTCTAGATATTTCGACGATTGTTCTGGTTGGCGGGGTCCT
TCTGATTCAAAATATATTTTTATTTTCCCTAGCCTTAGTCTCTATTCCCATCTACATCATTATTTTTTTCGTATTCATGA
AGATGTTTGGCTATTTAAACTATGAAGTGATGGAAAGCAGTGCAATGATGTCTTCATCTGTTATAGAAGATATTAACGGA
ATAGAAACTATTAAGTCCTTAACTAGTGAAGAAGTTAGTTACCAAAGAATTGACAAGGAATTTGTTATTTTTTTGGAGAA
ATCATTTAGATTACGTAAGTATGGGGCTATTCAAACTTCAATTAAAACCGCCGCAAAACTAATTTTAAATGTTATTATCC
TTTGGTATGGAGCTAAATTAGTTATGAGCGGTAAAATGTCAGCGGGACAAATGCTTACTTTTAATGTGCTTTTGGGTTAT
TTTTCAAATCCTCTTGAAAATATTATTAATTTGCAGACGAAGCTCCAATCAGCTCAAGTAGCCAATACCCGTCTCAATGA
AGTCTATCTGGTTAAGTCTGAGTTTGAAAATGATGGTGAGTTCTCAGAAGTTGCCTTCTTAGATGGTGATATCTCCTTTG
AAAAGATGTCCTATAAATATGGCTATGGTCGTGATACTATATCAGGTATCAATTTGACTATTCCCAAAGGCTCTAAAGTC
AGCATAGTAGGCTCTTCAGGATCGGGTAAGACAACTCTAGCTAAGTTGATGGTCAATTTTTATGAACCCAATTGCGGGGC
TGTCCGAATCAATGGCTATAATCTCAAGGTGATTGACAAAACTACCTTGCGGCAACACATAAGCTATCTACCCCAGCAGG
CCTATATTTTTAGTGGTACTATCATGGATAATCTGATCTTGGGAGCCAAAGAAGGCACTACACACGAAGATATTATCCGA
GCCTGTGAAATTGCTGAGATTCGCTCAGACATTGAGCAAATGCCGCTGGGTTACCAGACTGAGTTGTCTGACAGTGCTGG
AGTTTCCGGCGGTCAGAAGCAACGGATTGCTCTGGCTCGTGCTCTCTTAACTCAAGCCCCAGTTTTGATTTTGGATGAGG
CCACCAGCAGTCTAGATGTCCTGACTGAAAAGAAAATAGTCAATAACCTTATGGCCATGACCAATAAGACGATTATTTTT
GTGGCTCATCGCTTGAGTATTGCTCAACGGACAGATTGGATTATTGTTATGGATCAAGGTAGAATTGTGGAAAAAGGTAG
CCATAAGGAACTCTTGGCTAATAAAGGCTTCTACTACAAGTTATTTAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(548-696)

Peptidase C39 family (Peptidase_C39)

(53-189)

ABC transporter transmembrane region (ABC_membrane)

(215-485)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.053

98.952

0.713
  comA Streptococcus mitis NCTC 12261

61.972

93.054

0.577
  comA Streptococcus pneumoniae Rx1

61.127

93.054

0.569
  comA Streptococcus pneumoniae D39

61.127

93.054

0.569
  comA Streptococcus pneumoniae R6

61.127

93.054

0.569
  comA Streptococcus mitis SK321

61.127

93.054

0.569
  comA Streptococcus pneumoniae TIGR4

60.845

93.054

0.566
  comA Streptococcus gordonii str. Challis substr. CH1

59.804

93.578

0.56

Multiple sequence alignment