Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HF907_RS15305 Genome accession   NZ_CP051173
Coordinates   3312997..3313533 (-) Length   178 a.a.
NCBI ID   WP_011000383.1    Uniprot ID   Q8Y2B4
Organism   Ralstonia pseudosolanacearum strain UW763     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3307997..3318533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF907_RS15300 (HF907_15360) - 3308586..3312590 (-) 4005 WP_226951765.1 PIN domain-containing protein -
  HF907_RS15305 (HF907_15365) ssb 3312997..3313533 (-) 537 WP_011000383.1 single-stranded DNA-binding protein Machinery gene
  HF907_RS15310 (HF907_15370) - 3313581..3314744 (-) 1164 WP_011000382.1 MFS transporter -
  HF907_RS15315 (HF907_15375) uvrA 3314967..3317831 (+) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  HF907_RS15320 (HF907_15380) - 3317911..3318396 (+) 486 WP_011000380.1 adenosine-specific kinase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18697.54 Da        Isoelectric Point: 5.9786

>NTDB_id=383098 HF907_RS15305 WP_011000383.1 3312997..3313533(-) (ssb) [Ralstonia pseudosolanacearum strain UW763]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGGGAR
RQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=383098 HF907_RS15305 WP_011000383.1 3312997..3313533(-) (ssb) [Ralstonia pseudosolanacearum strain UW763]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAAGGC
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAGTACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGTGGCGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGGGCGGTGGCG
GTTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGTGGTGGTCAGGGCGGCGGCGCGCGC
CGTCAGCAGGCGCCTTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.517
  ssb Vibrio cholerae strain A1552

47.027

100

0.489
  ssb Neisseria meningitidis MC58

43.575

100

0.438
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.433
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.079

100

0.371

Multiple sequence alignment