Detailed information NTG0383098

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B7D52_RS20555
• Genome accession: NZ_CP043362
• Coordinates: 4203505..4204305 (+)
• Length: 266 a.a.
• NCBI ID: WP_071081184.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain WCHKP085104
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4198505..4209305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7D52_RS20520 (B7D52_20665)	gspH	4198661..4199176 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
B7D52_RS20525 (B7D52_20670)	gspI	4199173..4199538 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
B7D52_RS20530 (B7D52_20675)	gspJ	4199535..4200131 (+)	597	WP_071081183.1	type II secretion system minor pseudopilin GspJ	-
B7D52_RS20535 (B7D52_20680)	gspK	4200128..4201114 (+)	987	WP_077270338.1	type II secretion system minor pseudopilin GspK	-
B7D52_RS20540 (B7D52_20685)	gspL	4201101..4202294 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
B7D52_RS20545 (B7D52_20690)	-	4202287..4202772 (+)	486	WP_004151943.1	type II secretion system protein M	-
B7D52_RS20550 (B7D52_20695)	-	4202762..4203508 (+)	747	WP_023316460.1	type II secretion system protein N	-
B7D52_RS20555 (B7D52_20700)	pilD	4203505..4204305 (+)	801	WP_071081184.1	A24 family peptidase	Machinery gene
B7D52_RS20560 (B7D52_20705)	hrpB	4204353..4206782 (-)	2430	WP_023282188.1	ATP-dependent helicase HrpB	-
B7D52_RS20565 (B7D52_20710)	thpR	4206855..4207391 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
B7D52_RS20570 (B7D52_20715)	sfsA	4207391..4208107 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
B7D52_RS20575 (B7D52_20720)	dksA	4208270..4208725 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=383098 B7D52_RS20555 WP_071081184.1 4203505..4204305(+) (pilD) [Klebsiella pneumoniae strain WCHKP085104]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQQLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=383098 B7D52_RS20555 WP_071081184.1 4203505..4204305(+) (pilD) [Klebsiella pneumoniae strain WCHKP085104]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCAGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425