Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HF909_RS15855 Genome accession   NZ_CP051169
Coordinates   3283227..3283769 (-) Length   180 a.a.
NCBI ID   WP_193026571.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2474     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3278227..3288769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF909_RS15835 (HF909_15935) - 3278804..3279328 (-) 525 WP_193026569.1 hypothetical protein -
  HF909_RS15840 (HF909_15940) - 3279365..3280708 (+) 1344 WP_193035147.1 DUF2314 domain-containing protein -
  HF909_RS15845 (HF909_15945) - 3281158..3282144 (+) 987 WP_193026003.1 IS5 family transposase -
  HF909_RS15850 (HF909_15950) - 3282676..3282834 (-) 159 WP_193035149.1 hypothetical protein -
  HF909_RS15855 (HF909_15955) ssb 3283227..3283769 (-) 543 WP_193026571.1 single-stranded DNA-binding protein Machinery gene
  HF909_RS15860 (HF909_15960) - 3283821..3284984 (-) 1164 WP_408005018.1 MFS transporter -
  HF909_RS15865 (HF909_15965) uvrA 3285207..3288071 (+) 2865 WP_193026573.1 excinuclease ABC subunit UvrA Machinery gene
  HF909_RS15870 (HF909_15970) - 3288152..3288637 (+) 486 WP_193026574.1 adenosine-specific kinase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18926.77 Da        Isoelectric Point: 5.9786

>NTDB_id=382973 HF909_RS15855 WP_193026571.1 3283227..3283769(-) (ssb) [Ralstonia pseudosolanacearum strain RUN2474]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYIEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQQSGG
ARRQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=382973 HF909_RS15855 WP_193026571.1 3283227..3283769(-) (ssb) [Ralstonia pseudosolanacearum strain RUN2474]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACTGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCTTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACATCGAAGGC
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAATACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
TGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGCGGTGGTGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGGGCGGTG
GCGGCTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGCGGTGGTCAGCAGAGCGGCGGC
GCGCGCCGTCAGCAGGCGCCGTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.936

100

0.511
  ssb Vibrio cholerae strain A1552

48.663

100

0.506
  ssb Neisseria meningitidis MC58

42.778

100

0.428
  ssb Neisseria gonorrhoeae MS11

42.222

100

0.422