Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   HF909_RS15865 Genome accession   NZ_CP051169
Coordinates   3285207..3288071 (+) Length   954 a.a.
NCBI ID   WP_193026573.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2474     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3280207..3293071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF909_RS15845 (HF909_15945) - 3281158..3282144 (+) 987 WP_193026003.1 IS5 family transposase -
  HF909_RS15850 (HF909_15950) - 3282676..3282834 (-) 159 WP_193035149.1 hypothetical protein -
  HF909_RS15855 (HF909_15955) ssb 3283227..3283769 (-) 543 WP_193026571.1 single-stranded DNA-binding protein Machinery gene
  HF909_RS15860 (HF909_15960) - 3283821..3284984 (-) 1164 WP_408005018.1 MFS transporter -
  HF909_RS15865 (HF909_15965) uvrA 3285207..3288071 (+) 2865 WP_193026573.1 excinuclease ABC subunit UvrA Machinery gene
  HF909_RS15870 (HF909_15970) - 3288152..3288637 (+) 486 WP_193026574.1 adenosine-specific kinase -
  HF909_RS15875 (HF909_15975) - 3288739..3289359 (-) 621 WP_016724271.1 LysE family translocator -
  HF909_RS15880 (HF909_15980) - 3289454..3290047 (-) 594 WP_019717494.1 adenine phosphoribosyltransferase -
  HF909_RS15885 (HF909_15985) - 3290180..3290758 (+) 579 WP_193026575.1 DJ-1/PfpI family protein -
  HF909_RS15890 (HF909_15990) - 3290803..3291207 (+) 405 WP_193026576.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105591.15 Da        Isoelectric Point: 6.8084

>NTDB_id=382974 HF909_RS15865 WP_193026573.1 3285207..3288071(+) (uvrA) [Ralstonia pseudosolanacearum strain RUN2474]
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS
PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKG
EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDR
RNQFYFQMLQSLAAFYEFDTDTPFEELPTEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIA
VREELAKYQNNQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDE
DMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIELSPGSLTGEYLSGKRRIEVPAQRTAPDEARWLRIVNASGNNLKHVNA
DIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGKNITEVL
EMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIE
LLLKVIYKLRDHGNTIVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGAPEEVAKSKSSFTGKYLAPLLKRK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=382974 HF909_RS15865 WP_193026573.1 3285207..3288071(+) (uvrA) [Ralstonia pseudosolanacearum strain RUN2474]
ATGGAAGCCATCAAGATTCGTGGGGCCCGGACCCACAACCTGAAGAACATCAACCTCGATCTGCCGCGCAACCAGCTGGT
GGTGATCACGGGGCTGTCGGGGTCGGGCAAGTCCTCGCTCGCGTTCGACACACTCTATGCGGAAGGGCAGCGCCGCTACG
TGGAGTCGCTGTCGGCCTATGCGCGGCAGTTCCTGCAACTGATGGAAAAGCCGGACGTCGACCTGATCGAAGGCCTGTCG
CCGGCCATCTCGATCGAGCAGAAAGCCACCAGCCACAACCCGCGCTCCACCGTCGGCACCGTCACCGAGATCCACGACTA
CCTGCGCCTGCTGTACGCCCGCGCCGGCACGCCCTACTGCCCGGAGCACGGCCAGCCGCTGGAAGCGCAAAGCGTGTCGC
AGATGGTGGATGCCGTGCTGGCGCTGCCGGCCGACACCAAGCTGATGATCCTGGCGCCCGTGGTGACCAACCGCAAGGGC
GAACACGTCGACCTGTTCGAGGCGATGCAGGCGCAGGGCTTCGTGCGCTTCCGCATCCGCTCGGGCGGCGGCACGGCGCA
CGAGGCCGAGGCCAAGGTCTACGAGGTCGACGCGCTGCCCAAGCTGAAGAAGAACGACAAGCACGCCATCGAGGTGGTGG
TCGATCGCGTCAAGGTCAACCCGGAACTCAAGCAGCGCCTGGCCGAATCCTTCGAAACCGCGCTGCGCCTGGCCGACGGC
CGCGCCCTCGCGCTGGAGATGGACACGGGCAAGGAGCACGTCTTCAGCTCCAAGTTCGCCTGCCCGATCTGCTCGTATTC
GCTGCCGGAGCTCGAGCCGCGCCTGTTCTCGTTCAACAACCCGATGGGCGCCTGCCCCCATTGCGACGGCCTGGGCCAGA
TCACCTTCTTCGACCCGAAGCGCGTGGTGGCCTTCCCCAACCTGTCGCTGGCCTCGGGCGCCATCAAGGGCTGGGACCGC
CGCAACCAGTTCTACTTCCAGATGCTGCAAAGCCTGGCGGCGTTCTACGAGTTCGACACCGACACGCCGTTCGAAGAGCT
GCCCACCGAAGTCCAGGACGTCGTGCTGCAGGGCTCGGGCAAGCAGCAGATCCCGTTCACGTACATCAACGAGCGCGGCC
GCACCACGGTGCGCGAGCACGCCTTCGAGGGCATCATCCCCAACCTGGAGCGGCGCTACAAGGAAACCGACTCCATCGCC
GTGCGCGAAGAGCTGGCCAAGTACCAGAACAACCAGGCCTGCCCCGAGTGCGAAGGCACGCGCCTGCGCCGCGAGGCGCG
CCACGTCAAGCTCGGCGACAGCGACCAGGCCCGCGCCATCTACGAGATCAACGGCTGGCCGCTGCGCGATGCGCTCACGT
ATTTCCTCACGCTGAACCTGCACGGCGCCAAGCGCGAGATCGCCGACAAGATCGTCCAGGAAATCACCTCGCGGCTGAAC
TTCCTGAACAACGTCGGGCTCGACTACCTGTCGCTGGAGCGCAGCGCCGATACGCTCTCCGGCGGCGAGGCGCAGCGCAT
CCGCCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTGATGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGC
GCGACAACGACCGGCTGATCGGCACCCTCAAGCACCTGCGCGACCTCGGCAACTCGGTGCTGGTGGTCGAGCACGATGAA
GACATGATCCGCGCCTCGGACCACGTGGTCGACATCGGCCCCGGCGCCGGCGTGCACGGCGGCCAGATCATCGCCGAGGG
CACGCCCAGGCAGATCGAGCTGTCGCCCGGCTCGCTGACCGGCGAATACCTGTCGGGCAAGCGCCGCATCGAGGTGCCCG
CGCAGCGCACCGCGCCCGACGAAGCGCGCTGGCTGCGCATCGTCAACGCGTCGGGCAACAACCTGAAGCACGTCAACGCC
GACATCCCGGTCGGGCTGCTCACCTGCGTGACGGGCGTCTCGGGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTA
CAACGCGGTGGCGCGCCACCTCTACGGCTCCACCCCGGAGCCCACCGCGCACGACCGCATCGACGGCCTGGAGCACTTCG
ACAAAGTCATCAACGTCGATCAGTCGCCGATCGGCCGCACCCCGCGCTCCAACCCGGCCACCTACACCGGCCTGTTCACG
CCGATCCGCGAGCTGTACGCGGGCGTGCCGGCCGCCAAGGAGCGCGGCTACGACCCGGGCCGCTTCTCGTTCAACGTCAA
GGGCGGCCGCTGCGAGGCGTGCCAGGGCGACGGCGTGCTCAAGGTCGAGATGCACTTCCTGCCCGACGTGTACGTGCCCT
GCGACGTGTGCCACGGCAAGCGCTACAACCGCGAGACGCTGGAGGTGCTGTACAAGGGCAAGAACATCACCGAAGTGCTC
GAGATGACGGTCGAGCAGGCGCACGAGTTCTTCGCGCCGGTGCCGGTGGTGCGCCGCAAGCTGCAGACGCTGCTGGACGT
GGGCCTGGGCTACATCCGCCTGGGCCAGTCGGCGACCACGCTGTCGGGCGGCGAGGCGCAGCGCGTGAAGCTGTCGCTGG
AGCTGTCCAAGCGCGACACCGGCCGCACGCTCTACATCCTCGACGAGCCAACCACTGGTCTGCACTTCCACGACATCGAA
CTGCTGCTCAAGGTCATCTACAAGCTGCGCGACCATGGCAACACGATCGTGATCATCGAGCACAACCTCGACGTGATCAA
AACGGCGGACTGGCTGCTCGACCTCGGCCCCGAAGGCGGCGCCGGCGGCGGGCAGATCATCGCCAAGGGCGCGCCGGAAG
AGGTGGCCAAGAGCAAGTCGAGCTTTACCGGCAAATATCTGGCGCCGTTGCTCAAGCGCAAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(298-407)

UvrA interaction domain (UvrA_inter)

(130-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.494

99.266

0.561
  uvrA Streptococcus pneumoniae TIGR4

56.494

99.266

0.561
  uvrA Streptococcus pneumoniae D39

56.494

99.266

0.561