Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FYN22_RS15250 Genome accession   NZ_CP043307
Coordinates   3140351..3141838 (+) Length   495 a.a.
NCBI ID   WP_062033311.1    Uniprot ID   A0AAW6J338
Organism   Acinetobacter johnsonii strain Acsw19     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3135351..3146838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS15225 (FYN22_15225) ribD 3136252..3137355 (-) 1104 WP_148826911.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FYN22_RS15230 (FYN22_15230) nrdR 3137370..3137828 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  FYN22_RS15235 (FYN22_15235) - 3137980..3139383 (-) 1404 WP_010325684.1 ammonium transporter -
  FYN22_RS15240 (FYN22_15240) glnK 3139443..3139781 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  FYN22_RS15245 (FYN22_15245) - 3140058..3140285 (+) 228 WP_058868719.1 accessory factor UbiK family protein -
  FYN22_RS15250 (FYN22_15250) comM 3140351..3141838 (+) 1488 WP_062033311.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FYN22_RS15255 (FYN22_15255) - 3141910..3142680 (-) 771 WP_148826912.1 TorF family putative porin -
  FYN22_RS15260 (FYN22_15260) - 3143027..3143797 (-) 771 WP_148826913.1 TorF family putative porin -
  FYN22_RS15265 (FYN22_15265) - 3144257..3145570 (+) 1314 WP_005401006.1 OprD family outer membrane porin -
  FYN22_RS15270 (FYN22_15270) ppa 3145673..3146197 (-) 525 WP_004692877.1 inorganic diphosphatase -
  FYN22_RS15275 (FYN22_15275) - 3146316..3146720 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54374.25 Da        Isoelectric Point: 8.0050

>NTDB_id=382784 FYN22_RS15250 WP_062033311.1 3140351..3141838(+) (comM) [Acinetobacter johnsonii strain Acsw19]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQVVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIQ
TGHLTEALSYRQQNA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=382784 FYN22_RS15250 WP_062033311.1 3140351..3141838(+) (comM) [Acinetobacter johnsonii strain Acsw19]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACTAAACGCCTCACCATTAACCTTGCACCCGCAGACCTGCCCAAAGACAGTTCACGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGGACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGTACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGGC
ATCAACTGATTTTACCTGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCGAGACGTGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TGCTATTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTCCCACCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGACAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATTGAAGCCAAAGAG
ATTGTGATTTCGCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTAATTGCCGCAATGAATCCGTGTCCCTG
TGGTTATGCGTTTAATCAAGATAGCCGTTGTCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGTATTTCCGGGC
CTTTGCTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCGTCTGAATTACAAGACACACAAGTCGTAGAA
GACTCGGCAACTGTACGTGAGCGCGTGATTCAAGCTTATCAATGGCAAATGCAGCGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAACAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCACCGTATTTTAAGAGTGGCCAGAACCATTGCGGATTTGGCCCAGTCAGAGCACATTCAA
ACGGGACATTTGACTGAAGCTCTCTCCTACCGACAGCAAAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Vibrio cholerae strain A1552

50.6

100

0.511
  comM Vibrio campbellii strain DS40M4

50.803

100

0.511
  comM Legionella pneumophila str. Paris

50.602

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.467

Multiple sequence alignment