Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FYA21_RS04980 Genome accession   NZ_CP043180
Coordinates   1022710..1024197 (-) Length   495 a.a.
NCBI ID   WP_000010454.1    Uniprot ID   A0AAV3JYP0
Organism   Acinetobacter baumannii strain PG20180064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1017710..1029197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS18665 - 1018397..1018567 (+) 171 WP_000492276.1 hypothetical protein -
  FYA21_RS04960 (FYA21_04960) - 1018624..1019436 (+) 813 WP_000975212.1 TorF family putative porin -
  FYA21_RS04965 (FYA21_04965) - 1019479..1020357 (-) 879 WP_016654434.1 dihydrodipicolinate synthase family protein -
  FYA21_RS04970 (FYA21_04970) - 1020373..1021149 (-) 777 WP_005135873.1 aldolase -
  FYA21_RS04975 (FYA21_04975) - 1021261..1022713 (+) 1453 Protein_942 PLP-dependent aminotransferase family protein -
  FYA21_RS04980 (FYA21_04980) comM 1022710..1024197 (-) 1488 WP_000010454.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FYA21_RS04985 (FYA21_04985) - 1024263..1024490 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  FYA21_RS04990 (FYA21_04990) glnK 1024770..1025108 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  FYA21_RS04995 (FYA21_04995) - 1025166..1026563 (+) 1398 WP_032030864.1 ammonium transporter -
  FYA21_RS05000 (FYA21_05000) nrdR 1026722..1027180 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  FYA21_RS05005 (FYA21_05005) ribD 1027196..1028281 (+) 1086 WP_096641155.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54446.29 Da        Isoelectric Point: 7.2553

>NTDB_id=382006 FYA21_RS04980 WP_000010454.1 1022710..1024197(-) (comM) [Acinetobacter baumannii strain PG20180064]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSNSVRQRVISAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=382006 FYA21_RS04980 WP_000010454.1 1022710..1024197(-) (comM) [Acinetobacter baumannii strain PG20180064]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTGGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTTCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAGCGCTATCAAAACCGCATATCGGGGC
CGTTACTCGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCCAATAGTGTTCGACAACGTGTGATTTCTGCTTATGAGCAACAAATGCAAAGACAGGATTGTTTGAATCAGGCCCT
CTCGCCCAAACAACTGGAACAATATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACTATTGCTGATTTGGCCCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.471

Multiple sequence alignment