Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GALF_RS12075 Genome accession   NC_014394
Coordinates   2611772..2612254 (-) Length   160 a.a.
NCBI ID   WP_013294343.1    Uniprot ID   D9SK11
Organism   Gallionella capsiferriformans ES-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2587767..2618707 2611772..2612254 within 0


Gene organization within MGE regions


Location: 2587767..2618707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALF_RS11960 (Galf_2401) - 2587767..2589041 (-) 1275 WP_013294326.1 Y-family DNA polymerase -
  GALF_RS11965 (Galf_2402) - 2589045..2589485 (-) 441 WP_013294327.1 LexA family transcriptional regulator -
  GALF_RS11970 (Galf_2403) - 2589598..2590239 (-) 642 WP_223293701.1 SOS response-associated peptidase -
  GALF_RS11975 (Galf_2404) - 2590285..2592603 (-) 2319 WP_013294329.1 AAA family ATPase -
  GALF_RS11980 (Galf_2405) - 2592600..2593028 (-) 429 WP_013294330.1 hypothetical protein -
  GALF_RS11985 (Galf_2406) - 2593025..2593450 (-) 426 WP_013294331.1 hypothetical protein -
  GALF_RS11990 (Galf_2407) - 2593443..2595533 (-) 2091 WP_041938082.1 hypothetical protein -
  GALF_RS11995 (Galf_2408) - 2595526..2596374 (-) 849 WP_150102613.1 site-specific integrase -
  GALF_RS12000 (Galf_2409) istB 2596399..2597166 (-) 768 WP_013294333.1 IS21-like element helper ATPase IstB -
  GALF_RS12005 istA 2597156..2598376 (-) 1221 WP_083777143.1 IS21 family transposase -
  GALF_RS12010 (Galf_2411) tnpA 2598435..2598797 (+) 363 WP_013292711.1 IS66-like element accessory protein TnpA -
  GALF_RS12015 (Galf_2412) tnpB 2598794..2599132 (+) 339 WP_013292710.1 IS66 family insertion sequence element accessory protein TnpB -
  GALF_RS12020 (Galf_2413) tnpC 2599190..2600719 (+) 1530 WP_013292709.1 IS66 family transposase -
  GALF_RS12025 - 2600703..2601068 (-) 366 WP_050752540.1 ArsR family transcriptional regulator -
  GALF_RS12030 (Galf_2414) - 2601203..2601406 (-) 204 WP_013294334.1 4-oxalocrotonate tautomerase family protein -
  GALF_RS12035 (Galf_2415) - 2601574..2602344 (-) 771 WP_150102614.1 hypothetical protein -
  GALF_RS12040 (Galf_2416) - 2602427..2603107 (-) 681 WP_013294336.1 hypothetical protein -
  GALF_RS12045 (Galf_2417) - 2603448..2605736 (-) 2289 WP_013294337.1 AAA family ATPase -
  GALF_RS12050 (Galf_2418) - 2605733..2606215 (-) 483 WP_013294338.1 hypothetical protein -
  GALF_RS12055 (Galf_2419) - 2606219..2606644 (-) 426 WP_013294339.1 hypothetical protein -
  GALF_RS12060 (Galf_2420) - 2606637..2608760 (-) 2124 WP_013294340.1 hypothetical protein -
  GALF_RS12065 (Galf_2421) - 2608753..2610315 (-) 1563 WP_013294341.1 site-specific integrase -
  GALF_RS12070 (Galf_2422) - 2610302..2611540 (-) 1239 WP_190274081.1 tyrosine-type recombinase/integrase -
  GALF_RS12075 (Galf_2423) ssb 2611772..2612254 (-) 483 WP_013294343.1 single-stranded DNA-binding protein Machinery gene
  GALF_RS12080 (Galf_2424) - 2612501..2614057 (+) 1557 WP_013294344.1 YdiU family protein -
  GALF_RS12085 (Galf_2425) - 2614064..2615182 (-) 1119 WP_013294345.1 alginate O-acetyltransferase AlgX-related protein -
  GALF_RS12090 (Galf_2426) - 2615193..2616599 (-) 1407 WP_013294346.1 MBOAT family protein -
  GALF_RS12095 (Galf_2427) - 2616639..2617310 (-) 672 WP_013294347.1 cellulose acetylase subunit -
  GALF_RS12100 (Galf_2428) - 2617568..2618707 (-) 1140 WP_013294348.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17908.03 Da        Isoelectric Point: 7.0191

>NTDB_id=38107 GALF_RS12075 WP_013294343.1 2611772..2612254(-) (ssb) [Gallionella capsiferriformans ES-2]
MSVNKVILIGRLGKDPETRYMPNGEAVTNATLATSENWKDKSGVKQEKTEWHNLTFYRRLAEVAGEYLKKGSMIYVEGKL
QTRKWQDKEGKDRYTTEILVNEMTMLGGKSTGGSFEVMDDQPSQQSQPARSQAPSAPRSAPAPAASQARNFDNFDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=38107 GALF_RS12075 WP_013294343.1 2611772..2612254(-) (ssb) [Gallionella capsiferriformans ES-2]
ATGTCGGTAAATAAAGTGATTTTGATCGGCCGTTTAGGCAAAGACCCGGAAACGCGCTATATGCCTAACGGGGAAGCGGT
CACCAATGCGACGCTGGCAACTTCTGAAAACTGGAAGGACAAGAGCGGCGTCAAGCAGGAAAAAACCGAATGGCATAACC
TGACCTTCTATCGTCGTCTGGCGGAAGTCGCTGGTGAATACCTGAAAAAAGGCTCGATGATCTATGTCGAAGGTAAGCTG
CAGACGCGCAAGTGGCAGGACAAGGAAGGCAAAGATCGTTACACCACGGAAATTCTGGTGAACGAGATGACCATGCTGGG
CGGAAAATCAACCGGTGGCAGCTTTGAAGTGATGGACGATCAGCCGTCCCAGCAGTCTCAGCCTGCGCGTTCTCAAGCGC
CATCGGCACCGAGATCAGCACCTGCGCCCGCTGCAAGTCAGGCACGCAATTTTGATAACTTCGACGACGATATTCCTTTT
TAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9SK11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

53.672

100

0.594
  ssb Vibrio cholerae strain A1552

52.874

100

0.575
  ssb Neisseria gonorrhoeae MS11

51.977

100

0.575
  ssb Glaesserella parasuis strain SC1401

48.588

100

0.538
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.523

100

0.369

Multiple sequence alignment