Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   FXN57_RS00520 Genome accession   NZ_CP043005
Coordinates   106966..107295 (-) Length   109 a.a.
NCBI ID   WP_148323258.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101966..112295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS00495 (FXN57_00495) serA 102729..103954 (-) 1226 Protein_98 phosphoglycerate dehydrogenase -
  FXN57_RS00500 (FXN57_00500) rpiA 103974..104630 (-) 657 WP_148363059.1 ribose-5-phosphate isomerase RpiA -
  FXN57_RS00505 (FXN57_00505) hemW 104729..105898 (-) 1170 WP_148328434.1 radical SAM family heme chaperone HemW -
  FXN57_RS00510 (FXN57_00510) - 105898..106221 (-) 324 WP_148363060.1 YbjQ family protein -
  FXN57_RS00515 (FXN57_00515) rdgB 106260..106853 (-) 594 WP_148323256.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  FXN57_RS00520 (FXN57_00520) comE1/comEA 106966..107295 (-) 330 WP_148323258.1 helix-hairpin-helix domain-containing protein Machinery gene
  FXN57_RS00525 (FXN57_00525) ispH 107887..108831 (-) 945 WP_148328432.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FXN57_RS00530 (FXN57_00530) lspA 108831..109325 (-) 495 WP_148323262.1 signal peptidase II -
  FXN57_RS00535 (FXN57_00535) ileS 109405..112227 (-) 2823 WP_148323264.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11327.07 Da        Isoelectric Point: 9.6912

>NTDB_id=380153 FXN57_RS00520 WP_148323258.1 106966..107295(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain PN_696]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=380153 FXN57_RS00520 WP_148323258.1 106966..107295(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAAGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60

100

0.606
  comEA/comE1 Glaesserella parasuis strain SC1401

52.632

100

0.55
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385

Multiple sequence alignment