Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FXN59_RS02425 Genome accession   NZ_CP043004
Coordinates   452696..453181 (-) Length   161 a.a.
NCBI ID   WP_042889788.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 447696..458181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS12340 - 447893..448078 (-) 186 WP_262404584.1 hypothetical protein -
  FXN59_RS02400 (FXN59_02400) - 448071..448475 (-) 405 WP_262404585.1 DUF6602 domain-containing protein -
  FXN59_RS02405 (FXN59_02405) - 448468..448968 (-) 501 WP_262404586.1 Mov34/MPN/PAD-1 family protein -
  FXN59_RS02410 (FXN59_02410) - 448989..449756 (+) 768 WP_151294167.1 IS5 family transposase -
  FXN59_RS02415 (FXN59_02415) - 449817..451094 (-) 1278 WP_262404587.1 ThiF family adenylyltransferase -
  FXN59_RS12345 - 451110..451439 (-) 330 WP_262404588.1 hypothetical protein -
  FXN59_RS02420 (FXN59_02420) - 451441..452373 (-) 933 WP_148328600.1 nucleotidyltransferase -
  FXN59_RS02425 (FXN59_02425) ssb 452696..453181 (-) 486 WP_042889788.1 single-stranded DNA-binding protein Machinery gene
  FXN59_RS02430 (FXN59_02430) uvrA 453352..456183 (+) 2832 WP_151294169.1 excinuclease ABC subunit UvrA -
  FXN59_RS02435 (FXN59_02435) - 456252..456662 (-) 411 WP_005579882.1 MerR family transcriptional regulator -
  FXN59_RS02440 (FXN59_02440) - 456783..457094 (-) 312 WP_005561250.1 DciA family protein -
  FXN59_RS02445 (FXN59_02445) secM 457186..457503 (+) 318 WP_005561253.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18048.92 Da        Isoelectric Point: 5.3111

>NTDB_id=380133 FXN59_RS02425 WP_042889788.1 452696..453181(-) (ssb) [Aggregatibacter actinomycetemcomitans strain HK_973]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQFGGNYTPAAVAQPSYPSQQQSAPRSAPASKPATEAPMDNFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=380133 FXN59_RS02425 WP_042889788.1 452696..453181(-) (ssb) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAACATCACTGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGCGAACGCCGTGAAGTCACCGAATGGC
ACCGTATCGTATTTTATCGCCGCCAGGCAGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTGTATGTTGAAGGA
CGCTTAAGAACCCGTAAATGGCAAGATCAAAACGGTCAGGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGTGCCGATCGCCAATTCGGCGGAAACTACACACCGGCTGCAGTTGCCCAACCAAGTTATCCAAGCCAAC
AACAAAGCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCACTGAAGCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

71.111

100

0.795
  ssb Vibrio cholerae strain A1552

58.382

100

0.627
  ssb Neisseria meningitidis MC58

46.893

100

0.516
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.516
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.24

100

0.366

Multiple sequence alignment