Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   FXN59_RS00465 Genome accession   NZ_CP043004
Coordinates   95548..95877 (-) Length   109 a.a.
NCBI ID   WP_148326696.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 90548..100877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS00440 (FXN59_00440) serA 91306..92536 (-) 1231 Protein_87 phosphoglycerate dehydrogenase -
  FXN59_RS00445 (FXN59_00445) rpiA 92556..93212 (-) 657 WP_005539288.1 ribose-5-phosphate isomerase RpiA -
  FXN59_RS00450 (FXN59_00450) hemW 93311..94480 (-) 1170 WP_151294032.1 radical SAM family heme chaperone HemW -
  FXN59_RS00455 (FXN59_00455) - 94480..94803 (-) 324 WP_148326694.1 YbjQ family protein -
  FXN59_RS00460 (FXN59_00460) - 94842..95435 (-) 594 WP_005568418.1 XTP/dITP diphosphatase -
  FXN59_RS00465 (FXN59_00465) comE1/comEA 95548..95877 (-) 330 WP_148326696.1 helix-hairpin-helix domain-containing protein Machinery gene
  FXN59_RS00470 (FXN59_00470) ispH 96469..97413 (-) 945 WP_148326698.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FXN59_RS00475 (FXN59_00475) lspA 97413..97907 (-) 495 WP_151294034.1 signal peptidase II -
  FXN59_RS00480 (FXN59_00480) ileS 97988..100810 (-) 2823 WP_151294036.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11399.18 Da        Isoelectric Point: 9.6912

>NTDB_id=380130 FXN59_RS00465 WP_148326696.1 95548..95877(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain HK_973]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVSEKVNINTASAAEIQKALVGIGVKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=380130 FXN59_RS00465 WP_148326696.1 95548..95877(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCAGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCAGCTGAACCGGCGGTGCAAACGGAGCAACCGGCGGCAACGGCAGCGGTCAGTGAAAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAGGCCCTTGTAGGCATCGGTGTGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.909

100

0.615
  comEA/comE1 Glaesserella parasuis strain SC1401

52.632

100

0.55
  comEA Vibrio parahaemolyticus RIMD 2210633

43.396

97.248

0.422
  comEA Vibrio cholerae C6706

48.235

77.982

0.376
  comEA Vibrio cholerae strain A1552

48.235

77.982

0.376

Multiple sequence alignment