Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FXN58_RS04625 Genome accession   NZ_CP043003
Coordinates   874067..874771 (-) Length   234 a.a.
NCBI ID   WP_148324406.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 869067..879771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS04605 (FXN58_04600) - 869115..869798 (-) 684 WP_005542522.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  FXN58_RS04610 (FXN58_04605) - 870104..871762 (+) 1659 WP_148324397.1 phospho-sugar mutase -
  FXN58_RS04615 (FXN58_04610) envC 871971..873230 (+) 1260 WP_148324400.1 murein hydrolase activator EnvC -
  FXN58_RS04620 (FXN58_04615) - 873227..874055 (+) 829 Protein_885 divergent polysaccharide deacetylase family protein -
  FXN58_RS04625 (FXN58_04620) comM 874067..874771 (-) 705 WP_148324406.1 ATP-binding protein Machinery gene
  FXN58_RS04630 (FXN58_04625) - 874906..875568 (+) 663 WP_148324409.1 TnsA endonuclease N-terminal domain-containing protein -
  FXN58_RS04635 (FXN58_04630) - 875561..877480 (+) 1920 Protein_888 Mu transposase C-terminal domain-containing protein -
  FXN58_RS04640 (FXN58_04635) - 877480..878373 (+) 894 WP_148324412.1 TniB family NTP-binding protein -
  FXN58_RS04645 (FXN58_04640) - 878331..879449 (+) 1119 WP_148324415.1 TniQ family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26240.22 Da        Isoelectric Point: 10.0496

>NTDB_id=380122 FXN58_RS04625 WP_148324406.1 874067..874771(-) (comM) [Aggregatibacter actinomycetemcomitans strain HK_907]
MPLICNFDSGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHY
QGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVLLLPQGSLQNIGDRGESSATVREKVLKTRAIQLQRASKINAHLNSKE
IERDCKLTDKNALFLENALTKLGLSVRAYHRILKVSRTIADLDGEQHINQRHLAEALGYRAMDRLLQKLAKNSA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=380122 FXN58_RS04625 WP_148324406.1 874067..874771(-) (comM) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGCCACTTATTTGTAACTTTGACAGCGGCACGATCCCCAAACCGGGCGAAATTTCCCTCGCTCACAATGGTGTGTTATT
TTTAGATGAATTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGTCAACCATTGGAAAGTGGCGAAATTATTATTT
CCCGTGCCAACGCGAAGATTCAATTTCCGGCAAAATTTCAACTGATTGCCGCGATGAACCCTAGCCCGACAGGGCATTAT
CAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGAATCGTTTGTCCGGCCCTTTTTTAGATCGCTT
CGATTTATCCATTGAAGTGCTCTTATTGCCACAAGGTAGCTTACAAAATATCGGCGATCGTGGCGAATCCAGCGCAACGG
TGCGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCAGCAAAATTAATGCCCATTTAAATAGCAAAGAA
ATCGAACGGGACTGCAAACTTACCGACAAAAACGCACTATTCCTGGAAAATGCCCTGACTAAACTGGGGCTTTCCGTACG
GGCGTACCACCGCATACTGAAAGTGTCCCGCACCATTGCCGATTTAGATGGAGAACAACACATCAACCAGCGCCATCTGG
CCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTGGCGAAAAACTCGGCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-116)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

85.652

98.291

0.842
  comM Glaesserella parasuis strain SC1401

80.172

99.145

0.795
  comM Vibrio cholerae strain A1552

66.516

94.444

0.628
  comM Vibrio campbellii strain DS40M4

64.253

94.444

0.607
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

52.444

96.154

0.504
  comM Legionella pneumophila str. Paris

52.336

91.453

0.479
  comM Legionella pneumophila strain ERS1305867

52.336

91.453

0.479

Multiple sequence alignment