Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FXN58_RS02805 Genome accession   NZ_CP043003
Coordinates   523523..524008 (+) Length   161 a.a.
NCBI ID   WP_042889788.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 518523..529008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS02785 (FXN58_02780) secM 519201..519518 (-) 318 WP_005561253.1 secA translation cis-regulator SecM -
  FXN58_RS02790 (FXN58_02785) - 519610..519921 (+) 312 WP_005561250.1 DciA family protein -
  FXN58_RS02795 (FXN58_02790) - 520042..520452 (+) 411 WP_148323766.1 MerR family transcriptional regulator -
  FXN58_RS02800 (FXN58_02795) uvrA 520521..523352 (-) 2832 WP_148323768.1 excinuclease ABC subunit UvrA -
  FXN58_RS02805 (FXN58_02800) ssb 523523..524008 (+) 486 WP_042889788.1 single-stranded DNA-binding protein Machinery gene
  FXN58_RS02810 (FXN58_02805) - 524330..525262 (+) 933 WP_148323770.1 nucleotidyltransferase -
  FXN58_RS02815 (FXN58_02810) - 525264..526886 (+) 1623 WP_148323772.1 ThiF family adenylyltransferase -
  FXN58_RS02820 (FXN58_02815) - 526947..527714 (-) 768 WP_148323191.1 IS5-like element ISAac2 family transposase -
  FXN58_RS02825 (FXN58_02820) - 527849..528235 (+) 387 WP_392388678.1 Mov34/MPN/PAD-1 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18048.92 Da        Isoelectric Point: 5.3111

>NTDB_id=380118 FXN58_RS02805 WP_042889788.1 523523..524008(+) (ssb) [Aggregatibacter actinomycetemcomitans strain HK_907]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQFGGNYTPAAVAQPSYPSQQQSAPRSAPASKPATEAPMDNFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=380118 FXN58_RS02805 WP_042889788.1 523523..524008(+) (ssb) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAACATCACTGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGCGAACGCCGTGAAGTCACCGAATGGC
ACCGTATCGTATTTTATCGCCGCCAGGCAGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTGTATGTTGAAGGA
CGCTTAAGAACCCGTAAATGGCAAGATCAAAACGGTCAGGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGTGCCGATCGCCAATTCGGCGGAAACTACACACCGGCTGCAGTTGCCCAACCAAGTTATCCAAGCCAAC
AACAAAGCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCACTGAAGCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

71.111

100

0.795
  ssb Vibrio cholerae strain A1552

58.382

100

0.627
  ssb Neisseria meningitidis MC58

46.893

100

0.516
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.516
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.24

100

0.366

Multiple sequence alignment