Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   FXN58_RS00530 Genome accession   NZ_CP043003
Coordinates   109612..109941 (-) Length   109 a.a.
NCBI ID   WP_148323258.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 104612..114941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS00505 (FXN58_00505) serA 105375..106600 (-) 1226 Protein_99 phosphoglycerate dehydrogenase -
  FXN58_RS00510 (FXN58_00510) rpiA 106620..107276 (-) 657 WP_005548427.1 ribose-5-phosphate isomerase RpiA -
  FXN58_RS00515 (FXN58_00515) hemW 107375..108544 (-) 1170 WP_148323252.1 radical SAM family heme chaperone HemW -
  FXN58_RS00520 (FXN58_00520) - 108544..108867 (-) 324 WP_148323254.1 YbjQ family protein -
  FXN58_RS00525 (FXN58_00525) rdgB 108906..109499 (-) 594 WP_148323256.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  FXN58_RS00530 (FXN58_00530) comE1/comEA 109612..109941 (-) 330 WP_148323258.1 helix-hairpin-helix domain-containing protein Machinery gene
  FXN58_RS00535 (FXN58_00535) ispH 110534..111478 (-) 945 WP_148323260.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FXN58_RS00540 (FXN58_00540) lspA 111478..111972 (-) 495 WP_148323262.1 signal peptidase II -
  FXN58_RS00545 (FXN58_00545) ileS 112052..114874 (-) 2823 WP_148323264.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11327.07 Da        Isoelectric Point: 9.6912

>NTDB_id=380109 FXN58_RS00530 WP_148323258.1 109612..109941(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain HK_907]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=380109 FXN58_RS00530 WP_148323258.1 109612..109941(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAAGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60

100

0.606
  comEA/comE1 Glaesserella parasuis strain SC1401

52.632

100

0.55
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385

Multiple sequence alignment