Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | FWK48_RS09135 | Genome accession | NZ_CP042987 |
| Coordinates | 1984006..1984341 (+) | Length | 111 a.a. |
| NCBI ID | WP_011608278.1 | Uniprot ID | - |
| Organism | Histophilus somni strain UOC-KLM-ATR-08 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1979006..1989341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK48_RS09110 (FWK48_09110) | - | 1980333..1980812 (-) | 480 | WP_011608283.1 | Dps family protein | - |
| FWK48_RS09115 (FWK48_09115) | - | 1980965..1981534 (-) | 570 | WP_075293539.1 | anthranilate synthase component II | - |
| FWK48_RS09120 (FWK48_09120) | - | 1981591..1982598 (+) | 1008 | WP_136121454.1 | aminodeoxychorismate synthase component I | - |
| FWK48_RS09125 (FWK48_09125) | - | 1982747..1983328 (+) | 582 | WP_136121453.1 | aminotransferase class IV family protein | - |
| FWK48_RS09130 (FWK48_09130) | - | 1983389..1983778 (+) | 390 | WP_011608279.1 | RidA family protein | - |
| FWK48_RS09135 (FWK48_09135) | comE1/comEA | 1984006..1984341 (+) | 336 | WP_011608278.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FWK48_RS09140 (FWK48_09140) | rdgB | 1984531..1985127 (+) | 597 | WP_011608277.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| FWK48_RS09145 (FWK48_09145) | hemW | 1985127..1986305 (+) | 1179 | WP_136121452.1 | radical SAM family heme chaperone HemW | - |
| FWK48_RS09150 (FWK48_09150) | rpiA | 1986401..1987060 (+) | 660 | WP_011608275.1 | ribose-5-phosphate isomerase RpiA | - |
| FWK48_RS09155 (FWK48_09155) | serA | 1987086..1988318 (+) | 1233 | WP_136121451.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12165.17 Da Isoelectric Point: 10.2041
>NTDB_id=379874 FWK48_RS09135 WP_011608278.1 1984006..1984341(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-08]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIINDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIINDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=379874 FWK48_RS09135 WP_011608278.1 1984006..1984341(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-08]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAACGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAACGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.459 |
100 |
0.595 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.333 |
100 |
0.577 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |