Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABH49_RS13375 Genome accession   NZ_CP042946
Coordinates   2763236..2764756 (-) Length   506 a.a.
NCBI ID   WP_000058977.1    Uniprot ID   -
Organism   Escherichia fergusonii strain ATCC 35470     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2758236..2769756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH49_RS13365 hdfR 2761915..2762754 (-) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -
  ABH49_RS13370 maoP 2762873..2763211 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  ABH49_RS13375 comM 2763236..2764756 (-) 1521 WP_000058977.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABH49_RS13380 ilvL 2765109..2765207 (+) 99 WP_001311244.1 ilv operon leader peptide -
  ABH49_RS13385 ilvX 2765295..2765345 (+) 51 WP_001387183.1 peptide IlvX -
  ABH49_RS13390 ilvG 2765348..2766994 (+) 1647 WP_105284524.1 acetolactate synthase 2 catalytic subunit -
  ABH49_RS13395 ilvM 2766991..2767254 (+) 264 WP_105284523.1 acetolactate synthase 2 small subunit -
  ABH49_RS13400 ilvE 2767274..2768203 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55201.33 Da        Isoelectric Point: 7.3875

>NTDB_id=379637 ABH49_RS13375 WP_000058977.1 2763236..2764756(-) (comM) [Escherichia fergusonii strain ATCC 35470]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=379637 ABH49_RS13375 WP_000058977.1 2763236..2764756(-) (comM) [Escherichia fergusonii strain ATCC 35470]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGTGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTACGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCACCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGATGCGCAGTGGCTGGAAGAAACACTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTTAAAGTTGCACGAACCATTGCTGATATTGATCAGTCCGACATTATT
ACACGTCAGCATTTGCAAGAGGCTGTTAGCTATCGTGCTATCGACCGCTTGCTCATCCATTTGCAAAAACTGCTGACATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

48.193

98.419

0.474
  comM Legionella pneumophila strain ERS1305867

48.193

98.419

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443

Multiple sequence alignment