Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FV158_RS06400 Genome accession   NZ_CP042942
Coordinates   1300997..1302517 (+) Length   506 a.a.
NCBI ID   WP_148047797.1    Uniprot ID   -
Organism   Escherichia fergusonii strain ATCC 35473     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1295997..1307517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FV158_RS06375 ilvE 1297551..1298480 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  FV158_RS06380 ilvM 1298500..1298763 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  FV158_RS06385 ilvG 1298760..1300406 (-) 1647 WP_148047796.1 acetolactate synthase 2 catalytic subunit -
  FV158_RS06390 ilvX 1300409..1300459 (-) 51 WP_001387183.1 peptide IlvX -
  FV158_RS06395 ilvL 1300546..1300644 (-) 99 WP_001311244.1 ilv operon leader peptide -
  FV158_RS06400 comM 1300997..1302517 (+) 1521 WP_148047797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FV158_RS06405 maoP 1302542..1302880 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  FV158_RS06410 hdfR 1302999..1303838 (+) 840 WP_000379253.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55140.33 Da        Isoelectric Point: 7.8956

>NTDB_id=379587 FV158_RS06400 WP_148047797.1 1300997..1302517(+) (comM) [Escherichia fergusonii strain ATCC 35473]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVMAARERQFKRQNKLNARLDSPEIRQFCKLESEDALWLEETLIHLGLSIRAWQRLLKVARTIADIAQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=379587 FV158_RS06400 WP_148047797.1 1300997..1302517(+) (comM) [Escherichia fergusonii strain ATCC 35473]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
TGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGACAACGAAGATGAAGTGGGGCTAATTAATGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCATTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGACACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGTGCCAAAATAACCTACCCGGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCTAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAACAAACTCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTTGACCGATTCGACCTCTCACTGGAGATCCCACTACCGCCACCCGGTATTTTGAGTAAAGCGGTTGTTCAGGGG
GAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCAG
GCTGGATAGTCCGGAAATACGGCAATTCTGCAAGCTTGAGAGCGAAGATGCGTTGTGGCTGGAAGAAACGCTAATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGCTCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443

Multiple sequence alignment