Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FV157_RS06420 | Genome accession | NZ_CP042941 |
| Coordinates | 1344230..1344769 (-) | Length | 179 a.a. |
| NCBI ID | WP_002438358.1 | Uniprot ID | H5V742 |
| Organism | Atlantibacter hermannii strain ATCC 33651 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1339230..1349769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FV157_RS06400 | - | 1339403..1341007 (-) | 1605 | WP_043866090.1 | EAL domain-containing protein | - |
| FV157_RS06405 | - | 1341295..1342692 (-) | 1398 | WP_002433957.1 | sensor domain-containing diguanylate cyclase | - |
| FV157_RS06410 | - | 1343266..1343544 (+) | 279 | WP_002433954.1 | YjcB family protein | - |
| FV157_RS06415 | - | 1343579..1343923 (-) | 345 | WP_002433952.1 | hypothetical protein | - |
| FV157_RS06420 | ssb | 1344230..1344769 (-) | 540 | WP_002438358.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| FV157_RS06425 | uvrA | 1345030..1347867 (+) | 2838 | WP_002438359.1 | excinuclease ABC subunit UvrA | - |
| FV157_RS06430 | - | 1347869..1348222 (-) | 354 | WP_002438361.1 | MmcQ/YjbR family DNA-binding protein | - |
| FV157_RS06435 | - | 1348219..1348641 (-) | 423 | WP_148051959.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19380.37 Da Isoelectric Point: 5.2358
>NTDB_id=379569 FV157_RS06420 WP_002438358.1 1344230..1344769(-) (ssb) [Atlantibacter hermannii strain ATCC 33651]
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYLPSGGAVANFTLATSDSWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQQAQGGNQFSGGAQSRPQQQQ
APASSNNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=379569 FV157_RS06420 WP_002438358.1 1344230..1344769(-) (ssb) [Atlantibacter hermannii strain ATCC 33651]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAACAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCGCCAGCCTCATCTAACAATGAGCCGCCAATGGACTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTATTTGCCAAGTGG
CGGCGCAGTCGCTAACTTCACGCTGGCTACTTCTGACTCCTGGCGCGATAAGCAAACCGGCGAAATGAAGGAACAGACTG
AGTGGCACCGCGTTGTGATGTTCGGCAAACTGGCTGAAGTGGCAGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCTGGTCAGGAACGCTATACCACCGAGATTAACGTTCCACAAAT
CGGCGGCGTAATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCGCCGGCTGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAACAGCCGCAGCAAGCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCACGTCCGCAGCAGCAACAG
GCGCCAGCCTCATCTAACAATGAGCCGCCAATGGACTTCGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.196 |
100 |
0.732 |
| ssb | Glaesserella parasuis strain SC1401 |
58.378 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
46.154 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.111 |
100 |
0.464 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.464 |
100 |
0.369 |