Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GmarT_RS06330 Genome accession   NZ_CP042910
Coordinates   1668027..1668518 (+) Length   163 a.a.
NCBI ID   WP_002647595.1    Uniprot ID   -
Organism   Gimesia maris strain DSM 8797     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1663027..1673518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GmarT_RS06315 (GmarT_13090) - 1666147..1666773 (+) 627 WP_002647598.1 50S ribosomal protein L25 -
  GmarT_RS06320 (GmarT_13100) pth 1666829..1667398 (+) 570 WP_002647597.1 aminoacyl-tRNA hydrolase -
  GmarT_RS06325 (GmarT_13110) rpsF 1667526..1667942 (+) 417 WP_002647596.1 30S ribosomal protein S6 -
  GmarT_RS06330 (GmarT_13120) ssb 1668027..1668518 (+) 492 WP_002647595.1 single-stranded DNA-binding protein Machinery gene
  GmarT_RS06335 (GmarT_13130) rplI 1668606..1669112 (+) 507 WP_002647594.1 50S ribosomal protein L9 -
  GmarT_RS06340 (GmarT_13140) dnaB 1669316..1670743 (+) 1428 WP_002647593.1 replicative DNA helicase -
  GmarT_RS06345 (GmarT_13150) - 1670792..1672759 (+) 1968 WP_002647592.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17062.75 Da        Isoelectric Point: 4.7821

>NTDB_id=379371 GmarT_RS06330 WP_002647595.1 1668027..1668518(+) (ssb) [Gimesia maris strain DSM 8797]
MASFNKVILVGNLTRDPQVRYTPGGSAVAEIGLAVNRSWFDKNSNSRKEETTFVDVTLWGRTAEVASEYLTKGRSVLIEG
RLQLDQWDDKESGQKRSKLKVVGENMTMLGGKGESGGGGGAPSGGGGGYASRGNAPSQGGGSSPADSFYDDTPGGIPDDD
VPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=379371 GmarT_RS06330 WP_002647595.1 1668027..1668518(+) (ssb) [Gimesia maris strain DSM 8797]
ATGGCCAGTTTTAATAAAGTCATACTGGTAGGCAATTTGACACGCGACCCACAGGTACGCTATACACCGGGGGGGAGTGC
GGTCGCGGAAATTGGTCTCGCTGTGAATCGCAGCTGGTTTGACAAGAACTCGAATTCCCGCAAAGAAGAAACCACGTTCG
TTGACGTGACGCTATGGGGACGCACTGCAGAAGTAGCCAGCGAATATCTGACCAAGGGGCGTTCCGTTCTGATTGAAGGT
CGTCTGCAACTGGATCAGTGGGATGATAAAGAGTCCGGACAGAAACGGAGCAAGCTCAAGGTGGTAGGCGAAAACATGAC
CATGCTGGGCGGCAAAGGTGAGTCTGGCGGCGGTGGTGGTGCACCATCGGGTGGTGGTGGCGGATATGCCTCACGTGGAA
ACGCTCCTTCGCAGGGTGGCGGTTCCAGTCCGGCAGATTCATTTTATGATGATACGCCTGGTGGGATTCCTGATGATGAT
GTGCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.085

100

0.497
  ssb Neisseria gonorrhoeae MS11

37.143

100

0.399
  ssb Neisseria meningitidis MC58

36.571

100

0.393
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.286

100

0.368

Multiple sequence alignment