Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FR888_RS23810 Genome accession   NZ_CP042512
Coordinates   4901931..4902461 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain E28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4896931..4907461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR888_RS23780 (FR888_23775) - 4897256..4898617 (-) 1362 WP_004936819.1 NCS2 family permease -
  FR888_RS23785 (FR888_23780) - 4898950..4899357 (-) 408 WP_038874298.1 VOC family protein -
  FR888_RS23790 (FR888_23785) - 4899405..4900073 (-) 669 WP_060434553.1 glutathione S-transferase family protein -
  FR888_RS23795 (FR888_23790) - 4900070..4900513 (-) 444 WP_060434551.1 lipocalin-like domain-containing protein -
  FR888_RS23800 (FR888_23795) - 4900710..4900970 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  FR888_RS23805 (FR888_23800) - 4901118..4901867 (+) 750 WP_060434549.1 3-oxoacyl-ACP reductase family protein -
  FR888_RS23810 (FR888_23805) ssb 4901931..4902461 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FR888_RS23820 (FR888_23815) uvrA 4902739..4905567 (+) 2829 WP_038874306.1 excinuclease ABC subunit UvrA -
  FR888_RS23825 (FR888_23820) - 4905797..4906849 (+) 1053 WP_060434547.1 NAD(P)-dependent alcohol dehydrogenase -
  FR888_RS23830 (FR888_23825) maa 4906880..4907437 (-) 558 WP_038874310.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=378206 FR888_RS23810 WP_004936793.1 4901931..4902461(-) (ssb) [Serratia marcescens strain E28]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=378206 FR888_RS23810 WP_004936793.1 4901931..4902461(-) (ssb) [Serratia marcescens strain E28]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment