Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | FR729_RS12175 | Genome accession | NZ_CP042449 |
| Coordinates | 2591382..2591975 (-) | Length | 197 a.a. |
| NCBI ID | WP_005382767.1 | Uniprot ID | A0AAP6DB92 |
| Organism | Vibrio alginolyticus strain FA2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2586382..2596975
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR729_RS12155 (FR729_12525) | aroB | 2587267..2588367 (-) | 1101 | WP_005382764.1 | 3-dehydroquinate synthase | - |
| FR729_RS12160 (FR729_12530) | aroK | 2588400..2588918 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FR729_RS12165 (FR729_12535) | pilQ | 2589106..2590851 (-) | 1746 | WP_005382765.1 | type IV pilus secretin PilQ | Machinery gene |
| FR729_RS12170 (FR729_12540) | pilP | 2590877..2591392 (-) | 516 | WP_167415487.1 | pilus assembly protein PilP | Machinery gene |
| FR729_RS12175 (FR729_12545) | pilO | 2591382..2591975 (-) | 594 | WP_005382767.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FR729_RS12180 (FR729_12550) | pilN | 2591968..2592543 (-) | 576 | WP_167415488.1 | PilN domain-containing protein | Machinery gene |
| FR729_RS12185 (FR729_12555) | pilM | 2592527..2593543 (-) | 1017 | WP_005382774.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FR729_RS12190 (FR729_12560) | - | 2593688..2596249 (+) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23029.56 Da Isoelectric Point: 5.0948
>NTDB_id=377952 FR729_RS12175 WP_005382767.1 2591382..2591975(-) (pilO) [Vibrio alginolyticus strain FA2]
MVDWQDLEIDEMAEWPLLPQIVVIVLLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIVVIVLLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=377952 FR729_RS12175 WP_005382767.1 2591382..2591975(-) (pilO) [Vibrio alginolyticus strain FA2]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGTACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGTACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
87.895 |
96.447 |
0.848 |
| pilO | Vibrio cholerae strain A1552 |
70.681 |
96.954 |
0.685 |