Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NWAT_RS14955 | Genome accession | NC_014315 |
| Coordinates | 3273320..3273802 (+) | Length | 160 a.a. |
| NCBI ID | WP_013221859.1 | Uniprot ID | D8K4J7 |
| Organism | Nitrosococcus watsonii C-113 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3268320..3278802
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NWAT_RS14945 (Nwat_3079) | - | 3270617..3271723 (-) | 1107 | Protein_3021 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| NWAT_RS14950 (Nwat_3080) | - | 3271877..3273295 (+) | 1419 | WP_013221858.1 | MFS transporter | - |
| NWAT_RS14955 (Nwat_3081) | ssb | 3273320..3273802 (+) | 483 | WP_013221859.1 | single-stranded DNA-binding protein | Machinery gene |
| NWAT_RS14960 (Nwat_3082) | - | 3274311..3274889 (-) | 579 | WP_013221860.1 | HdeD family acid-resistance protein | - |
| NWAT_RS14970 (Nwat_3083) | ispB | 3275419..3276387 (-) | 969 | WP_013221861.1 | octaprenyl diphosphate synthase | - |
| NWAT_RS14975 (Nwat_3084) | rplU | 3276644..3276958 (+) | 315 | WP_013221862.1 | 50S ribosomal protein L21 | - |
| NWAT_RS14980 (Nwat_3085) | rpmA | 3276978..3277235 (+) | 258 | WP_013221863.1 | 50S ribosomal protein L27 | - |
| NWAT_RS14985 (Nwat_3086) | cgtA | 3277342..3278379 (+) | 1038 | WP_013221864.1 | Obg family GTPase CgtA | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17595.46 Da Isoelectric Point: 5.0432
>NTDB_id=37780 NWAT_RS14955 WP_013221859.1 3273320..3273802(+) (ssb) [Nitrosococcus watsonii C-113]
MASRGVNKVILIGNLGRDPEVRYTASGGAIANVTLATSETWKDKTTAEQQERTEWHRVVFFGRLGEIAGEYLKKGAKIYV
EGRLQTRKWQGQDGQDRYITEIVASEMQMLDRATGGSAPYSEDTGMTTEGATGHSPSRPQSRPSAPPPSSNEDFEDDIPF
MASRGVNKVILIGNLGRDPEVRYTASGGAIANVTLATSETWKDKTTAEQQERTEWHRVVFFGRLGEIAGEYLKKGAKIYV
EGRLQTRKWQGQDGQDRYITEIVASEMQMLDRATGGSAPYSEDTGMTTEGATGHSPSRPQSRPSAPPPSSNEDFEDDIPF
Nucleotide
Download Length: 483 bp
>NTDB_id=37780 NWAT_RS14955 WP_013221859.1 3273320..3273802(+) (ssb) [Nitrosococcus watsonii C-113]
ATGGCATCGAGGGGCGTAAACAAAGTCATTCTGATAGGCAACCTAGGGCGTGATCCGGAAGTTCGTTATACTGCCAGTGG
CGGGGCCATTGCTAATGTTACCCTGGCGACTTCGGAAACCTGGAAAGATAAAACCACTGCCGAGCAGCAGGAACGGACTG
AATGGCACCGGGTGGTATTCTTCGGCCGCCTAGGGGAAATTGCCGGAGAGTATCTAAAAAAAGGTGCTAAAATTTACGTG
GAGGGCCGCCTCCAAACTCGCAAGTGGCAAGGCCAGGACGGCCAAGACCGTTATATTACCGAGATTGTAGCTAGCGAGAT
GCAAATGCTGGATCGGGCCACGGGTGGCAGCGCCCCCTATAGCGAGGATACCGGCATGACCACAGAAGGCGCCACCGGGC
ACTCCCCGTCAAGACCTCAATCCCGGCCTTCAGCTCCCCCACCCTCTAGCAATGAGGATTTCGAGGATGATATTCCCTTT
TAG
ATGGCATCGAGGGGCGTAAACAAAGTCATTCTGATAGGCAACCTAGGGCGTGATCCGGAAGTTCGTTATACTGCCAGTGG
CGGGGCCATTGCTAATGTTACCCTGGCGACTTCGGAAACCTGGAAAGATAAAACCACTGCCGAGCAGCAGGAACGGACTG
AATGGCACCGGGTGGTATTCTTCGGCCGCCTAGGGGAAATTGCCGGAGAGTATCTAAAAAAAGGTGCTAAAATTTACGTG
GAGGGCCGCCTCCAAACTCGCAAGTGGCAAGGCCAGGACGGCCAAGACCGTTATATTACCGAGATTGTAGCTAGCGAGAT
GCAAATGCTGGATCGGGCCACGGGTGGCAGCGCCCCCTATAGCGAGGATACCGGCATGACCACAGAAGGCGCCACCGGGC
ACTCCCCGTCAAGACCTCAATCCCGGCCTTCAGCTCCCCCACCCTCTAGCAATGAGGATTTCGAGGATGATATTCCCTTT
TAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.062 |
100 |
0.631 |
| ssb | Glaesserella parasuis strain SC1401 |
47.753 |
100 |
0.531 |
| ssb | Neisseria meningitidis MC58 |
47.977 |
100 |
0.519 |
| ssb | Neisseria gonorrhoeae MS11 |
47.977 |
100 |
0.519 |