Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FGL82_RS01260 Genome accession   NZ_CP042418
Coordinates   262485..264302 (-) Length   605 a.a.
NCBI ID   WP_146992865.1    Uniprot ID   -
Organism   Leuconostoc citreum strain CBA3627     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 257485..269302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL82_RS01230 (FGL82_01230) - 257700..258083 (-) 384 WP_004907397.1 VOC family protein -
  FGL82_RS01235 (FGL82_01235) - 258149..258880 (-) 732 WP_004900146.1 hypothetical protein -
  FGL82_RS01240 (FGL82_01240) - 258885..259901 (-) 1017 WP_004900149.1 zinc-dependent alcohol dehydrogenase family protein -
  FGL82_RS01245 (FGL82_01245) - 260091..261059 (+) 969 WP_085699891.1 LacI family DNA-binding transcriptional regulator -
  FGL82_RS01250 (FGL82_01250) - 261092..262012 (-) 921 WP_085699889.1 NAD(P)-dependent oxidoreductase -
  FGL82_RS01255 (FGL82_01255) - 262032..262433 (-) 402 WP_004905938.1 cytidine deaminase -
  FGL82_RS01260 (FGL82_01260) pepF 262485..264302 (-) 1818 WP_146992865.1 oligoendopeptidase F Regulator
  FGL82_RS01265 (FGL82_01265) - 264360..265397 (-) 1038 WP_085699887.1 competence protein CoiA family protein -
  FGL82_RS01270 (FGL82_01270) - 265446..266885 (-) 1440 WP_186727979.1 ABC transporter substrate-binding protein/permease -
  FGL82_RS01275 (FGL82_01275) - 266980..267732 (-) 753 WP_004900167.1 amino acid ABC transporter ATP-binding protein -
  FGL82_RS01280 (FGL82_01280) - 267729..269177 (-) 1449 WP_004907404.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68859.73 Da        Isoelectric Point: 4.7805

>NTDB_id=377787 FGL82_RS01260 WP_146992865.1 262485..264302(-) (pepF) [Leuconostoc citreum strain CBA3627]
MKQQVLISNNMPQIKRHEVPTALTWDLTTIFSSDEAWEKTFQKVHESAQNMTRFVGHVGDSADMLQAALVADLSLERLLE
KVYVYAHQIYDQDTTNQQYAAFNARVQALWAEVSEATAYFQPEVLRIPDTVLAEYLATPGLEPFSHLFDTIRLQKPHTLP
VEQEALLAGASDIFNASENTFGVLDNSDLSFGDVHTETGELVPLTNGLYSLLLESQSRDLRQEAFDTLYDSYISFQNTFA
STLSSHVKGHNFLAKARHYNSAREAAILPHGLPTTVFETLRKSVNDHLPLLHRFVSLRRQVLGVEDVHSYDLYVPLVDDV
TFDVSYDKAQDIVIKALAPLGEDYVRIVQRAFDERWIDVVENKGKRTGAYSSGAYDTNPFILLNWQDNLNNVYTLAHELG
HSVHSYLTRHTQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNHDPKVQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHQQ
AAEGEALTADKMSSYYGELNQKYYGPDLFPDEAIAYEWARIPHFYYNYYVYQYATGEAAATTLADRIINHDGANDYKNYL
RAGASDYPLNVIGKAGVDMSQSDYLNQAFHVFETRLNQLEKLLAN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=377787 FGL82_RS01260 WP_146992865.1 262485..264302(-) (pepF) [Leuconostoc citreum strain CBA3627]
ATGAAGCAGCAAGTGTTGATCAGTAATAATATGCCACAGATAAAGCGTCATGAAGTGCCAACAGCGTTAACATGGGATTT
AACAACTATTTTTTCATCAGATGAGGCCTGGGAAAAGACTTTTCAAAAAGTTCATGAATCAGCTCAAAATATGACGCGTT
TCGTTGGGCACGTCGGTGATTCGGCTGACATGTTACAAGCGGCATTAGTGGCAGATTTATCGTTGGAACGTTTATTAGAG
AAAGTTTACGTCTACGCCCACCAAATATATGATCAAGACACAACTAATCAGCAGTATGCAGCATTTAACGCTCGAGTACA
GGCGCTTTGGGCTGAAGTTAGTGAAGCGACGGCCTATTTTCAGCCTGAAGTATTGCGCATTCCTGATACGGTATTAGCTG
AGTATCTAGCAACACCTGGGTTAGAACCATTTAGTCATTTATTTGATACGATTCGTTTACAAAAGCCACACACACTACCT
GTTGAACAAGAAGCGCTACTAGCTGGTGCTAGTGATATTTTTAATGCGTCTGAAAATACATTTGGTGTGCTTGATAATTC
AGATCTGTCTTTCGGAGATGTGCATACTGAAACAGGTGAACTGGTGCCTTTGACTAATGGTTTGTACAGTCTATTATTAG
AATCGCAATCACGCGACCTACGTCAGGAAGCATTTGATACACTCTATGACAGCTATATTAGTTTTCAAAATACTTTTGCT
TCAACACTGTCATCGCATGTGAAAGGCCATAATTTCTTGGCGAAAGCACGACATTATAATTCAGCGCGCGAGGCCGCTAT
TTTACCACATGGCTTACCTACAACGGTTTTTGAGACCCTAAGAAAATCAGTTAATGATCATTTGCCATTACTACATCGAT
TTGTCTCGTTACGTCGTCAAGTGTTGGGTGTTGAAGACGTCCATAGCTATGACTTATACGTGCCCTTAGTTGATGATGTT
ACATTTGATGTTTCCTATGATAAGGCGCAAGACATTGTGATTAAAGCATTAGCGCCATTGGGCGAGGATTATGTGCGTAT
TGTCCAGCGTGCCTTTGATGAACGTTGGATAGATGTTGTTGAAAACAAGGGTAAACGGACAGGAGCATACTCTAGCGGCG
CGTACGATACCAATCCTTTTATTCTATTGAATTGGCAAGATAATTTAAATAATGTTTATACTTTAGCTCATGAGTTGGGA
CATTCTGTTCATTCTTATTTAACAAGACATACACAACCTTATCATTACGGTGACTACCCCATTTTTTTGGCAGAAATTGC
TTCTACAACGAATGAAAGTCTATTAACAGATTATTTACTGAAAACTAATCATGATCCTAAGGTGCAAGCTTATGTCTTGA
ACCAATATCTAGACGGTTTCAAAGGGACGGTCTTTAGACAAACGCAATTTGCAGAATTTGAAGATTGGATTCATCAACAA
GCTGCTGAGGGCGAGGCTCTAACGGCTGATAAAATGAGTAGTTATTATGGTGAATTAAATCAAAAGTATTATGGCCCAGA
TTTGTTTCCTGATGAGGCTATTGCGTATGAGTGGGCACGAATTCCGCATTTTTATTACAATTACTATGTTTATCAATATG
CAACAGGTGAAGCAGCTGCTACAACACTAGCTGACCGTATTATCAATCACGATGGTGCTAATGACTACAAAAATTATTTA
CGTGCTGGCGCCTCTGATTATCCGCTAAATGTTATTGGAAAAGCTGGTGTTGATATGAGCCAGTCAGATTATCTGAACCA
AGCTTTCCATGTCTTTGAAACGCGACTGAACCAGTTAGAAAAGTTACTTGCAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(212-589)

Oligopeptidase F (Peptidase_M3_N)

(123-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

98.182

0.507

Multiple sequence alignment