Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HB753_RS09755 Genome accession   NZ_CP050270
Coordinates   1987372..1987965 (+) Length   197 a.a.
NCBI ID   WP_002262395.1    Uniprot ID   Q8CWW3
Organism   Streptococcus mutans strain S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982372..1992965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS09745 (HB753_09745) - 1984729..1985007 (-) 279 Protein_1883 transposase -
  HB753_RS09750 (HB753_09750) hexB 1985232..1987187 (+) 1956 WP_019804939.1 DNA mismatch repair endonuclease MutL Machinery gene
  HB753_RS09755 (HB753_09755) ruvA 1987372..1987965 (+) 594 WP_002262395.1 Holliday junction branch migration protein RuvA Machinery gene
  HB753_RS09760 (HB753_09760) - 1988047..1988607 (+) 561 WP_002271569.1 DNA-3-methyladenine glycosylase I -
  HB753_RS09765 (HB753_09765) cinA 1988756..1990012 (+) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  HB753_RS09770 (HB753_09770) recA 1990052..1991203 (+) 1152 WP_002288707.1 recombinase RecA Machinery gene
  HB753_RS09775 (HB753_09775) spx 1991288..1991686 (+) 399 WP_002262391.1 transcriptional regulator Spx -
  HB753_RS09780 (HB753_09780) - 1991937..1992362 (+) 426 WP_002271571.1 hypothetical protein -
  HB753_RS09785 (HB753_09785) - 1992503..1992703 (+) 201 Protein_1891 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21896.11 Da        Isoelectric Point: 5.6313

>NTDB_id=377697 HB753_RS09755 WP_002262395.1 1987372..1987965(+) (ruvA) [Streptococcus mutans strain S4]
MYDYIKGNLTKITAKYIVLETGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=377697 HB753_RS09755 WP_002262395.1 1987372..1987965(+) (ruvA) [Streptococcus mutans strain S4]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAACTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

72.081

100

0.721
  ruvA Streptococcus pneumoniae D39

72.081

100

0.721
  ruvA Streptococcus pneumoniae TIGR4

72.081

100

0.721
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411