Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FGL86_RS04815 Genome accession   NZ_CP042382
Coordinates   1009792..1011300 (+) Length   502 a.a.
NCBI ID   WP_147183532.1    Uniprot ID   A0A5B8SR48
Organism   Pistricoccus aurantiacus strain CBA4606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1004792..1016300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL86_RS04795 (FGL86_04795) - 1004879..1005925 (+) 1047 WP_186764472.1 spermidine/putrescine ABC transporter substrate-binding protein -
  FGL86_RS04800 (FGL86_04800) - 1006077..1006871 (+) 795 WP_186764473.1 cache domain-containing protein -
  FGL86_RS04805 (FGL86_04805) - 1006937..1008069 (+) 1133 WP_147183530.1 IS3 family transposase -
  FGL86_RS04810 (FGL86_04810) - 1008123..1009700 (+) 1578 WP_147183531.1 EAL domain-containing protein -
  FGL86_RS04815 (FGL86_04815) comM 1009792..1011300 (+) 1509 WP_147183532.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FGL86_RS04825 (FGL86_04825) - 1011788..1012066 (+) 279 WP_147183533.1 hypothetical protein -
  FGL86_RS04830 (FGL86_04830) - 1012155..1013072 (-) 918 WP_186764474.1 LysR family transcriptional regulator -
  FGL86_RS04835 (FGL86_04835) - 1013199..1013609 (+) 411 WP_147183535.1 carboxymuconolactone decarboxylase family protein -
  FGL86_RS04840 (FGL86_04840) - 1013714..1014709 (+) 996 WP_147183536.1 aldo/keto reductase -
  FGL86_RS04845 (FGL86_04845) - 1014787..1015272 (-) 486 WP_147183537.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54044.36 Da        Isoelectric Point: 7.9935

>NTDB_id=377523 FGL86_RS04815 WP_147183532.1 1009792..1011300(+) (comM) [Pistricoccus aurantiacus strain CBA4606]
MTLAIIKSRASLGLEAPEVLVEVHLANGLPGLTLVGLPETAVKESRERVRSALVNAGLEFPTTRRITLNLAPADLPKEGG
RFDLPIALGILVASGQIPPERLEGLECLGELALDGKLRQVPGVLPVALAAKRTGRGLILPRANADEAALAGDLTVLPADH
LLEVVAHLLNETSIPPHRLERPPISLPTTMDLLEVRGQHQARRALEVAASGGHNLLFAGPPGTGKTMLASRLPGILPTLT
EDEALEVAAIRSVCGLPLQEQWGQRPFRAPHHTASAAALVGGGSKPRPGEISLAHQGVLFLDELPEFSRSVLEVMREPME
SGQIHIARASHQRSYPARFQLVAAMNPCPCGHLGDPRQPCHCTASQIQRYQGRLSGPLLDRIDLQIEVPALPPEQLTSRA
AGESSADVRARVVAARERQYARGALNAHLPGRELEAACALESQDRAWLAQVLERLNLSARAYHRVLRVALTLADLAGESR
PGRAQLMEAIGYRQLDRLLKRQ

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=377523 FGL86_RS04815 WP_147183532.1 1009792..1011300(+) (comM) [Pistricoccus aurantiacus strain CBA4606]
ATGACGCTGGCCATCATCAAGAGCCGGGCAAGCCTGGGGCTGGAGGCGCCGGAGGTGCTGGTCGAGGTGCATCTGGCCAA
TGGCCTGCCGGGGCTGACCCTGGTGGGCCTGCCGGAAACCGCGGTCAAGGAAAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAATGCCGGGCTGGAATTTCCGACGACCCGGCGCATTACCTTGAATCTGGCCCCGGCGGATCTGCCCAAGGAAGGCGGG
CGTTTCGACCTGCCCATCGCCCTGGGCATTCTGGTCGCTTCCGGTCAGATTCCCCCGGAGCGTCTGGAAGGGCTCGAGTG
TCTCGGCGAACTAGCGCTGGACGGCAAGCTGCGCCAGGTACCCGGGGTGCTTCCGGTGGCCCTGGCGGCCAAGCGCACCG
GGCGCGGCCTGATCCTGCCCCGGGCCAACGCGGATGAGGCGGCGCTAGCCGGGGATCTCACCGTGCTGCCGGCGGATCAT
CTGCTGGAAGTGGTGGCGCATCTGCTCAACGAGACGTCGATCCCCCCGCACCGCCTGGAACGTCCGCCCATCAGCCTGCC
CACCACCATGGATCTGCTCGAGGTGCGCGGCCAGCATCAGGCCCGGCGCGCCCTGGAGGTCGCCGCGAGCGGCGGCCACA
ATCTGCTTTTCGCAGGCCCGCCCGGCACCGGCAAGACCATGCTCGCCAGTCGTCTGCCGGGCATTCTGCCGACCCTCACC
GAGGACGAGGCCCTGGAAGTGGCGGCGATACGTTCCGTGTGCGGGCTGCCGCTACAGGAGCAGTGGGGTCAGCGGCCCTT
TCGTGCGCCGCATCATACCGCCAGCGCCGCCGCGCTAGTAGGTGGTGGCTCGAAACCTCGCCCCGGGGAGATTTCCCTGG
CGCACCAAGGGGTGCTGTTTCTGGACGAACTGCCGGAATTCAGCCGCAGCGTGCTGGAAGTGATGCGCGAGCCCATGGAG
TCCGGGCAGATTCATATCGCTCGGGCCAGCCATCAGCGCAGCTACCCGGCGCGTTTCCAGCTGGTCGCGGCGATGAACCC
TTGCCCCTGCGGCCATCTGGGAGATCCTCGCCAGCCTTGCCACTGCACCGCCAGCCAGATTCAGCGCTATCAGGGCCGGC
TTTCCGGGCCGCTGTTGGATCGTATCGATCTACAGATTGAGGTGCCGGCCCTGCCCCCGGAGCAGTTGACATCGAGAGCG
GCGGGGGAAAGCTCCGCGGACGTTCGCGCTCGGGTTGTCGCCGCTCGGGAGCGCCAGTACGCCCGAGGCGCCCTCAACGC
CCATCTGCCCGGTCGCGAACTGGAAGCCGCCTGCGCCCTGGAAAGCCAGGACCGGGCCTGGCTTGCCCAGGTACTCGAAC
GCCTCAATCTCTCCGCCCGCGCCTATCATCGGGTATTAAGGGTCGCTCTGACCCTGGCGGACCTGGCAGGTGAGTCTCGT
CCCGGCCGCGCGCAGTTGATGGAAGCCATCGGCTATCGCCAGTTGGACCGGCTGCTCAAGCGGCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8SR48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.548

100

0.568
  comM Vibrio campbellii strain DS40M4

55.556

100

0.558
  comM Glaesserella parasuis strain SC1401

54.28

100

0.556
  comM Haemophilus influenzae Rd KW20

53.543

100

0.542
  comM Legionella pneumophila str. Paris

50.598

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.598

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.193

99.203

0.478

Multiple sequence alignment