Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RPSI07_RS22485 Genome accession   NC_014311
Coordinates   3199595..3201127 (+) Length   510 a.a.
NCBI ID   WP_013213678.1    Uniprot ID   -
Organism   Ralstonia solanacearum PSI07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3194595..3206127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPSI07_RS22460 (RPSI07_3066) - 3195021..3196562 (-) 1542 WP_013213675.1 ammonium transporter -
  RPSI07_RS22465 (RPSI07_3067) - 3196595..3196933 (-) 339 WP_003262609.1 P-II family nitrogen regulator -
  RPSI07_RS22470 (RPSI07_3068) - 3196981..3197793 (-) 813 WP_013213676.1 TorF family putative porin -
  RPSI07_RS22475 (RPSI07_3069) - 3198345..3198608 (+) 264 WP_011000304.1 accessory factor UbiK family protein -
  RPSI07_RS22480 (RPSI07_3070) - 3198867..3199382 (+) 516 WP_013213677.1 hypothetical protein -
  RPSI07_RS22485 (RPSI07_3071) comM 3199595..3201127 (+) 1533 WP_013213678.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RPSI07_RS22490 (RPSI07_3072) - 3201272..3202762 (+) 1491 WP_013213679.1 tyrosinase family protein -
  RPSI07_RS22495 (RPSI07_3073) - 3202809..3203282 (+) 474 WP_013213680.1 hypothetical protein -
  RPSI07_RS22500 (RPSI07_3074) - 3203346..3203987 (-) 642 WP_013213681.1 LysE family transporter -
  RPSI07_RS22505 (RPSI07_3075) - 3204069..3204638 (-) 570 WP_013213682.1 hypothetical protein -
  RPSI07_RS22510 (RPSI07_3076) - 3204730..3205245 (+) 516 WP_013213683.1 O-acetyl-ADP-ribose deacetylase -
  RPSI07_RS22515 (RPSI07_3077) - 3205340..3205894 (+) 555 WP_013213684.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54560.36 Da        Isoelectric Point: 7.8270

>NTDB_id=37751 RPSI07_RS22485 WP_013213678.1 3199595..3201127(+) (comM) [Ralstonia solanacearum PSI07]
MSLAVLRSRALAGIDAPAVSVEVHLANGLPTFTIVGLPDTEVKESKDRVRAAIQNSRFEFPTRRITVNLAPADLPKESGR
FDLPIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRHPGPPDNDAPFTRAFVLPAENAAEAALVS
GTRVLPARTLIEVCDHLSAPDRKLAPAAPAPVGTGVRYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMGDDEALSAAAVMSLTTRGFDAQRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVERYQARISGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTAAVAARVAAAHARQLARQGKRNALLAGHEIDLHCARTEAADSLLRQAMTRFSWSARAYARVLKLA
RTIADLAGDAAVDTAHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=37751 RPSI07_RS22485 WP_013213678.1 3199595..3201127(+) (comM) [Ralstonia solanacearum PSI07]
ATGAGTCTTGCCGTCCTGCGTTCGCGGGCGCTGGCCGGCATTGACGCGCCGGCGGTATCGGTGGAGGTGCACCTGGCCAA
CGGGCTGCCGACCTTCACCATCGTCGGCCTGCCGGACACGGAGGTGAAGGAAAGCAAAGACCGCGTGCGCGCAGCCATCC
AGAACAGCCGCTTCGAGTTTCCCACGCGGCGCATCACCGTCAATCTGGCGCCGGCCGATCTGCCGAAAGAGTCGGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTCGCCGCCAGCCGGCAGATTCCGCATACGCACCTGGACGCGCACGAGTTTGC
GGGCGAGCTGTCGCTGTCGGGCGACCTGCGACCGATCCGCGGCGCGCTGGCCATGGCGTATGCGCTGTCGCGCCACCCAG
GGCCGCCCGACAACGACGCGCCGTTCACCCGCGCCTTTGTCCTGCCCGCCGAGAATGCCGCCGAGGCGGCGCTGGTCAGC
GGCACCCGGGTGCTGCCGGCGCGTACGCTGATCGAGGTCTGCGACCACCTCTCCGCGCCCGACCGCAAGCTGGCGCCAGC
CGCGCCCGCCCCGGTCGGCACCGGCGTCCGCTATCCCGACCTGGCCGACGTACGGGGCCAGCCGCAGGCGCGCCGCGCCC
TGGAAGTGGCGGCGGCCGGCGGCCATTCGATGCTGATGATCGGTCCGCCCGGCACCGGCAAGTCCATGCTGGCCCAGCGC
TTTCCCGGCCTGCTGCCCGACATGGGCGACGATGAGGCGCTCTCCGCGGCCGCGGTGATGAGCCTGACCACGCGGGGCTT
CGACGCGCAGCGCTGGAAGGTGCGGCCGTTCCGCGCGCCGCATCACACGGCATCGGCGGTGGCGATGGTGGGCGGCGGCA
ACACGCCGCGGCCGGGCGAGATCTCGCTGGCGCACCAGGGCGTCCTGTTCCTCGATGAACTGCCCGAATTCGAACGCCGC
GTGCTGGAGGTCCTGCGGGAACCGCTGGAAACCGGCCATATCACCATCTCCCGCGCGGCGCACCAGACGGACTTTCCGGC
CAGTTTCCAACTGATCGCCGCCATGAATCCGTGCCCGTGCGGCTATCGCGGGCATCCGTTGCGCGCGTGCCGGTGCACGC
CGGACCAGGTAGAGCGCTATCAGGCCCGCATCTCCGGCCCGCTGCTCGATCGCATCGACGTGCAGATCGAGGTGCCGACG
CCATCGCAGGAAGAACTGCTCGATGGCCCGCCCGGCGAACCGACCGCCGCCGTGGCCGCGCGCGTGGCGGCGGCGCATGC
GCGGCAACTGGCACGCCAGGGCAAGCGCAACGCCCTGCTGGCCGGACACGAGATTGATCTGCATTGCGCGCGCACCGAAG
CCGCCGACAGCCTGCTGCGCCAGGCGATGACACGCTTCTCATGGTCGGCTCGCGCCTATGCGCGCGTGCTCAAGCTCGCT
CGCACCATCGCCGACCTGGCGGGCGATGCGGCTGTCGATACCGCGCACGTTGGCGAAGCCATCCAGTACCGGCGCGGCGT
GAAAGCGGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.36

99.216

0.529
  comM Vibrio campbellii strain DS40M4

52.079

99.02

0.516
  comM Glaesserella parasuis strain SC1401

50.881

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.98

100

0.51
  comM Legionella pneumophila str. Paris

50.98

100

0.51
  comM Haemophilus influenzae Rd KW20

49.225

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.442

100

0.429

Multiple sequence alignment