Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FR838_RS11570 Genome accession   NZ_CP042364
Coordinates   2400335..2401822 (-) Length   495 a.a.
NCBI ID   WP_005079484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain C54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2395335..2406822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS11540 (FR838_11540) - 2395365..2395553 (+) 189 WP_002121272.1 hypothetical protein -
  FR838_RS11545 (FR838_11545) - 2395592..2396404 (+) 813 WP_002121202.1 TorF family putative porin -
  FR838_RS11550 (FR838_11550) - 2396446..2397324 (-) 879 WP_002121240.1 dihydrodipicolinate synthase family protein -
  FR838_RS11555 (FR838_11555) - 2397340..2398116 (-) 777 WP_005079488.1 aldolase -
  FR838_RS11560 (FR838_11560) mocR 2398228..2399661 (+) 1434 WP_005079485.1 PLP-dependent aminotransferase family protein -
  FR838_RS11565 (FR838_11565) yieF 2399686..2400231 (-) 546 WP_005065691.1 NADPH-dependent FMN reductase -
  FR838_RS11570 (FR838_11570) comM 2400335..2401822 (-) 1488 WP_005079484.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FR838_RS11575 (FR838_11575) - 2401888..2402115 (-) 228 WP_002121136.1 accessory factor UbiK family protein -
  FR838_RS11580 (FR838_11580) glnK 2402394..2402732 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  FR838_RS11585 (FR838_11585) amtB 2402790..2404184 (+) 1395 WP_005079483.1 ammonium transporter -
  FR838_RS11590 (FR838_11590) nrdR 2404308..2404766 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  FR838_RS11595 (FR838_11595) ribD 2404782..2405867 (+) 1086 WP_032042380.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54480.55 Da        Isoelectric Point: 7.7209

>NTDB_id=377447 FR838_RS11570 WP_005079484.1 2400335..2401822(-) (comM) [Acinetobacter pittii strain C54]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSTEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQNEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=377447 FR838_RS11570 WP_005079484.1 2400335..2401822(-) (comM) [Acinetobacter pittii strain C54]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCAAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATCAAATCGCTATCTTCGACTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGTGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACATTATCTCATTTAG
GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCAGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAATGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.475

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.473

Multiple sequence alignment