Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FS596_RS22555 Genome accession   NZ_CP042353
Coordinates   4752403..4753923 (+) Length   506 a.a.
NCBI ID   WP_054307719.1    Uniprot ID   -
Organism   Serratia rubidaea strain H469     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4747403..4758923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FS596_RS22530 (FS596_22570) - 4747607..4748533 (-) 927 WP_015962285.1 branched-chain amino acid transaminase -
  FS596_RS22535 (FS596_22575) ilvM 4748554..4748820 (-) 267 WP_015962286.1 acetolactate synthase 2 small subunit -
  FS596_RS22540 (FS596_22580) ilvG 4748817..4750463 (-) 1647 WP_191978159.1 acetolactate synthase 2 catalytic subunit -
  FS596_RS22545 (FS596_22585) ilvL 4750606..4750704 (-) 99 WP_015962288.1 ilv operon leader peptide -
  FS596_RS22550 (FS596_22590) - 4750838..4752070 (-) 1233 WP_054307718.1 MFS transporter -
  FS596_RS22555 (FS596_22595) comM 4752403..4753923 (+) 1521 WP_054307719.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FS596_RS22560 (FS596_22600) - 4753950..4754288 (-) 339 WP_054307720.1 DUF413 domain-containing protein -
  FS596_RS22565 (FS596_22605) hdfR 4754409..4755236 (+) 828 WP_054307721.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54498.89 Da        Isoelectric Point: 8.8278

>NTDB_id=377348 FS596_RS22555 WP_054307719.1 4752403..4753923(+) (comM) [Serratia rubidaea strain H469]
MSLAVIFTRATLGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALLNNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIPADRLAEHEFLGELALSGALRAVSGAIPAAMAAQQDGRGLILPAENEGEVGLLPKEGTRVATHL
LAVCAFLLGQGELSLAQPPAAPPNANRGDLQDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLTDQ
EALESVAVASLQHQPAGRLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRTLDALREPLES
GEIVISRASAKVCFPARIQLIAAMNPSPTGHYQGMHNRTPPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGTLSKQQEPG
ESSQQVRQRVIAARERQLQRAGKINAILGKREVDRDCPLCDADAHYLETTLLKLGLSVRAWHRILKVARTLADLAGEKHI
ARHHLSEALGYRRMERLLIQLHRSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=377348 FS596_RS22555 WP_054307719.1 4752403..4753923(+) (comM) [Serratia rubidaea strain H469]
ATGTCATTGGCGGTTATTTTCACTCGGGCTACGCTGGGCGTTCAGGCGCCGTCGGTGACGGTCGAAGTCCATATCAGCAA
CGGGTTGCCCGGATTAACGCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGGCGCGCGATCGGGTACGCAGCGCACTGC
TCAACAACGGTTTTACCTTTCCCGCGAAACGCATCACCGTCAACCTGGCGCCGGCGGACCTGCCCAAGGAGGGCGGCCGG
TACGATCTGCCGATCGCTCTGGCGATCCTCGCCGCTTCGGAGCAGATCCCAGCAGATCGGCTGGCCGAACACGAATTTCT
CGGCGAGCTGGCGCTGTCCGGCGCATTGCGCGCCGTCAGCGGCGCCATCCCCGCAGCAATGGCGGCGCAGCAGGATGGCA
GAGGGCTGATCCTGCCTGCAGAAAATGAAGGGGAGGTCGGCCTGCTGCCGAAAGAGGGAACGCGGGTTGCAACGCACCTG
TTGGCCGTCTGCGCCTTTCTGCTTGGCCAGGGTGAACTGTCGCTTGCCCAGCCTCCCGCCGCGCCGCCTAACGCCAACCG
GGGGGATCTGCAGGATATTATCGGCCAGGAACAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCGGTCACAATCTGT
TGCTGCTCGGCCCGCCAGGCACCGGCAAAACCATGCTGGCAAGCCGCCTGCCGGGATTATTGCCGCCGCTAACCGACCAG
GAGGCGCTGGAGAGCGTTGCAGTCGCCAGCCTGCAGCATCAGCCCGCCGGCAGGCTGCCGTGGCGCCAGCGGCCATTCAG
GGCGCCGCACCACAGCGCATCCATGGCGGCACTGGTCGGCGGCGGCTCTCTGCCGCGTCCAGGGGAAATATCCATGGCGC
ACAATGGCGTGCTGTTCCTTGATGAACTCCCCGAATTTGAACGGCGCACGCTGGACGCCCTGCGCGAGCCTTTGGAATCC
GGGGAAATTGTCATTTCGCGCGCCAGTGCCAAAGTCTGCTTCCCGGCGCGAATTCAGCTGATCGCCGCCATGAATCCCAG
CCCGACCGGCCACTATCAGGGCATGCATAACCGAACCCCGCCACAGCAGGTTCTGCGCTATCTGGGCCGGCTTTCCGGGC
CGTTTCTCGACCGGTTCGATTTATCGATTGAAGTCCCCTTGCTGCCGCCCGGTACGCTCAGCAAACAGCAAGAGCCGGGA
GAAAGCAGCCAGCAGGTGCGCCAGCGCGTAATCGCGGCGCGGGAACGGCAATTGCAGCGCGCCGGAAAAATTAATGCCAT
TCTCGGCAAACGCGAAGTGGATCGAGATTGCCCATTGTGCGATGCCGACGCCCACTATCTAGAAACAACCTTGCTTAAGC
TGGGATTATCCGTACGCGCCTGGCATCGCATCCTCAAAGTAGCACGCACGCTGGCGGATTTAGCGGGAGAAAAACATATT
GCCCGCCACCATCTCAGCGAAGCATTAGGCTACCGTCGGATGGAACGCCTGCTGATCCAGCTACATCGCAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.613

100

0.656
  comM Vibrio cholerae strain A1552

65.936

99.209

0.654
  comM Glaesserella parasuis strain SC1401

64.694

100

0.648
  comM Vibrio campbellii strain DS40M4

64.94

99.209

0.644
  comM Legionella pneumophila str. Paris

49.407

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.407

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.455

Multiple sequence alignment